Pseudomonas protegens Pf-5, PFL_1330 (emhC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGTTCCTGTGTCTGGCAGCGCTGTATGAAAGCTGGTCGATTCCGATCGCAGTGATGCTGGTTGTGCCCCTGGGGATCATCGGTGCACTCATGGCAACCA GCATGCGCGGCCTGTCCAACGACGTGTACTTCCAGGTGGGTCTGTTGGTGACCATTGGTCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAA GGAACTGCACGAGCAGGGCCGCAGCCTGGTAGACGCCGCGGTGGAAGCCTGCCGGATGCGTCTGCGGCCGATCATCATGACCTCCCTGGCCTTCGTCCTC GGGGTCGTGCCACTGGCCATCTCCACGGGCGCCGGCTCGGGTAGCCAGCATGCGATCGGTACCGGGGTGATCGGCGGTATGCTCACCGCGACTATCCTGG CGATCTTCTGGGTGCCATTGTTCTTCGTCACCGTATCGTCCATGGGCCGCAGGAAAGCGGACCTGTCAGAAACTACTGCAACCCCTAATGAGGCTGGCCA
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| DNA Sequence for Gene |
>PFL_1330
|emhC
ATGAGCAAGTCGCTACTCTCCCTGGCAATCACCGCCATCGCGCTAAGTGGTTGCTCGCTGATCCCGGATTACCAGCGCCCGGAAGCGCCGGTGGCGGCGC AGTTCCCCCAAGGCCCAGCCTACTCGCCAAAGGAGGCCGCCAACGTGGCGGCCGCCGAACAGGGCTGGCGGCAGTTCTTCCATGACCCGGCTCTGCAGCA ACTGATCCAGACGTCCCTGGAAAACAACCGCGACCTCAGGGTCGCGGCGCTGAACATCGATGCCTACGCCGCGCAGTACCAGATCCAGCGGGCTGACCTG TTCCCTGCGGTTTCGGCCAACGCCAGCGGCAGCCGCCAGCGCACTCCGGCACGCATGTCGCAGACCGGCGAAGCCGGGATCACCAGCCAGTACTCGGCCA CCGTGGGCGTCAGTGCCTATGAACTGGACCTGTTCGGCCGCGTTCGCAGCCTGAGCGAGCAGGCCCTGCAGACCTACTTCTCCAGCGAAGAAGCCCGGCG CAGCACCCAGATCAGCCTGGTGGCCAGCGTGGCCAACGCCTACATGACCTGGCAGGCCGACAAGGAACTGCTGAAGCTGACCCAGGACACCCTCGCCGCC TACGAGGAAAGCTACCGGCTGACCTCGCGCAGCAACGAAGTGGGTGTGGCGTCGGCCCTGGACCTGAGCCAGTCGCGGACCTCGGTGGAAAACGCCCGGG TGCAACTGGCCCGTTACACCCGCCAGGTGGCCCAGGACGAAAACAGCCTGACCCTGCTGCTGGGTGCGGCGATTCCGGCCAATCTGCCGAAGGCCCAGCC GCTGTCGGCTGACCTGCTGAGCGACCTGCCGGCAGGCTTGCCGTCGGAGCTGCTGCAACGGCGTCCGGACATCCTCGAAGCCGAGTACAAGCTGAAAGCG GCCAACGCCAATATCGGCGCGGCGCGAGCAGCGTTCTTCCCGAGCATCAGCCTGACCGCCAATGCCGGTACCTTGAGCCCGGATCTCTCGGGCCTGTTCA AGGGGGGCTCGGGCACCTGGCTGTTCCAGCCGCAGATCAACCTGCCGATCTTCAACGCCGGCAGCCTGCGCGCCAGCCTGGACTACTCGAAAATCCAGAA AGACATCACCGTCGCGCAGTACGAGAAATCCATCCAGACCGCCTTCCAGGAAGTCTCCGATGGCCTGGCGGCACGCCAGACCTACAACCAGCAGTTGCAG GCCCAGCGTGATTTCGTCAACGCCAACCAGGACTACTATCGTCTGGCCGAGCGCCGCTACCGTATCGGGGTCGACAGCAACCTGACCTTCCTCGATGCCC AGCGGTCGCTGTTCAGCGCCCAGCAGGCACTGATCACCGATCGCCTGTCGCAGCTCACCAGCGAGGTCAACCTGTACAAGGCCCTCGGCGGTGGCTGGAG CGAACAGACAGCGAAGAACGAGCCACTGGCGGAAAAAGCCCCGGCGCTGCACCTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTCACCTGGCCATATGAAAAACCCACCTGACGGTGGGTTTTTTTATATGTACCAACTGGAACATTTGTGTTCGATTACCGCCCGAAAAGTGTTTCGT CCAATTGATTGGCCCTGATCCGCGACGCACCATTCCCGGCACCTGGACACACCAATAACAACAGGTCCGATGCCATGCCCCCACGCCCTGCCCGCTGCGG CTGATACCTCTGGTTCCACCCTGCTCCCCTGAAACCTGTGCCCAGACCCTTTGCGCGGCACTGGCCGGCTGCACCCCTAACAATTAGAGAGACCGACGAA TGAAGCCAAGCACCCCGCCGTCCTACCTTCTGCCCAGCCTCCTGGCCCTGGCGCTGAGCAGCACCGCCCTGCCGGCACTGGCCGCAGAGTCGGGCTTTCT CGAAGATGCCCAGGCCAACCTGACCCTGCGCAACTTCTATTTCAACCGCAACTTCACCAACCCGACCAAGGCCCAGGGCAAGGCCGAGGAATGGACCCAG
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| Amino Acid Sequence |
>efflux transporter, outer membrane factor lipoprotein EmhC
MSKSLLSLAITAIALSGCSLIPDYQRPEAPVAAQFPQGPAYSPKEAANVAAAEQGWRQFFHDPALQQLIQTSLENNRDLRVAALNIDAYAAQYQIQRADL FPAVSANASGSRQRTPARMSQTGEAGITSQYSATVGVSAYELDLFGRVRSLSEQALQTYFSSEEARRSTQISLVASVANAYMTWQADKELLKLTQDTLAA YEESYRLTSRSNEVGVASALDLSQSRTSVENARVQLARYTRQVAQDENSLTLLLGAAIPANLPKAQPLSADLLSDLPAGLPSELLQRRPDILEAEYKLKA ANANIGAARAAFFPSISLTANAGTLSPDLSGLFKGGSGTWLFQPQINLPIFNAGSLRASLDYSKIQKDITVAQYEKSIQTAFQEVSDGLAARQTYNQQLQ AQRDFVNANQDYYRLAERRYRIGVDSNLTFLDAQRSLFSAQQALITDRLSQLTSEVNLYKALGGGWSEQTAKNEPLAEKAPALHLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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