Pseudomonas protegens Pf-5, PFL_1290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCGGTAGCTGTTGTTCAGGTCCAGCTCGATCTGCACCTGGGGATAGTGCCGGGAGAACTCCAGCAGCAGGCCGTCGAAAAAGGTTTCCCCCAGGGAGA CCGGGACGGTGAGGCGCACCGGCCCGACCATATCGTCCTTGAGCCGCGCCAGGGCCTGGTGGGCCCGCTCGACCTGAGCCACCAGGGCCTGGGCCTGGGG TAGCAACGCCGCGCCGGCGGCCGTGAGGTCCAGGCGCCGGGTGGTGCGTTGCAGCAGTACCACGGCGTAGCGGGCTTCCAGGGCGCTGATGCGTTTGGAG AGCTGGCCCTTGCTGCACCCCAACTGCTGGGCCGCCAAGGTAAAGCTGCCGGCTTCCACCAGCACCGCAAATGCCGCCAGGTCATCCATCTCGCTCACGG ATTGTTTCCATTTGAAAACCAAAGGTTGCCTATTAGCGCGTTAATCCATAAAAAAAACCACTCTAGACTGCAACCTCACCCCCTTTTCGAGGAACAGCCC
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| DNA Sequence for Gene |
>PFL_1290
ATGAAGATTCTCTTGATCGGTGCCAATGGCACCATTGGTTCGGCGGTCGCGCGGGAGCTGGAACAACGTCACGAAGTGGTGCGCATCGGCCGTACCAGCG GTGATTTCCAGGTGGATATCAGCGACAGCCAGTCGATCCGCGCGCTGTTCGAAAAGACCGGGCGCTTCGATGCGCTGGTATGCGCCGCCGGTAACGTGAC CTTCGCGCCGCTGGGGGAAATGACTGCCGAGCACTTCAGCCTGGGCCTCGAGGACAAGCTGATGGGCCAGGTCAACCTGCTGCTGATCGGCCGCGAGTAC GCCAACGACGGCGCCTCCTTCACCTTCACCACCGGCGTCCTGAGCCACGACCCGATCCGCAGCGGCGCCTCGGCCGCCCTGGTCAACGGCGCCATCGACA GCTTCGTGCGGGCCGCTGCCATCGAGCTGCCCCGGGGCCTGCGGGTCAACTCCATCAGCCCCAACGTGCTGCTCGAAGCCATGGGCAGCTACGCGCCCTA CTTCCGCGGTTTCAAGCCGGTGCCGGCGGCCGACGTGGCCCTGGCCTACGCCAAGAGCGTGGAAGGCCTGCAGACCGGCCAGACCTATCGCGTCGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGTTTGTGCAAAAGCCGGCTTGTGCGGGAGCTGGCTCGCCTGCGCAGGCGTCCTCCCGAACCACACAAGGCTCCTGGGCCTCTTCGCCGGCAAGCCG GCGCCTACAGTGGATGGCGCTGCTGCGTTCAATCCGGGGTTGTGGTGGCCGGGCGGGCTGCGTAACGTGTCGGACTTCCGCCTGGAGGCCCAATGATGCG CACCGCCCGTTCCCTGCTTTGTTTCTCCCTGTTGCCGCTGTTTGCCGGCTGCCAGATGCTGCCGATGTTCAACCAACAGCCCCAGGCGCCGTCCATGGCC GGGTTGACCCGGATGCAGGGTGAACTCAGTGCCGCCGATGGCAAGCTGCTATTCAAACCCTGCACCGAAGACCGCCGTTATGTGGTCAACGATGGCGGCA ACACCAGTGTGCTGCAGGAAGCGGCAACCCTGGCCGAGAAGCAGGGCAAGCTGTTTGCCGACCTGCGGGGCAAGTTCTCCGCCAGTGCCAGCAGCGACGG
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| Amino Acid Sequence |
>short chain dehydrogenase
MKILLIGANGTIGSAVARELEQRHEVVRIGRTSGDFQVDISDSQSIRALFEKTGRFDALVCAAGNVTFAPLGEMTAEHFSLGLEDKLMGQVNLLLIGREY ANDGASFTFTTGVLSHDPIRSGASAALVNGAIDSFVRAAAIELPRGLRVNSISPNVLLEAMGSYAPYFRGFKPVPAADVALAYAKSVEGLQTGQTYRVG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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