Pseudomonas protegens Pf-5, PFL_0446 (pilN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Sequence Data

Strain Pseudomonas protegens Pf-5 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
CTGGCGACTCCTGGCGCCGTGGCGTTGCTGGATATAGGCCCGGCCCTCAGCCGTTTCAGCGTCCTGCACGGCCAGCGAGTGATCTATAGCCGTGAGCAGC TTTTCGGTAGCGGGCTGCTGATGGAAGCGCTCCAGCGTCGATACGGGCTGACACTGGAGCAGGCATTGCTGGCGCAGAGCCAGGGCCGTTTGCCACAGGG CTGCGCCGAAGAGTTGCTGCAACCCTTCGAGCAGGAAGTGCTGCAACAGGTCAGCCGTTCCCTGCAGCAGTTCGCCACCTCGCCTCAGCAACAGCCCCTG GTGCAACTGCTGCTGGCCGGAGACGGTAGCGGCCTGGCCGGCCTGGAGCGCCGGGTGGAGGGCGAGACAGGCATCGATACGTCGCTGGCCAATCCTTTCC GGGCCATGCCGATGGGGCCTCGAGTCGACCCCCAGGTATTGAATGAACAGGCGCCGAACCTGCTCCTGGCCTGTGGCCTGGCCCTGCGAGGGTTCGACTG
DNA Sequence for Gene
>PFL_0446 |pilN
ATGGCGCGGATCAACCTGTTGCCCTGGCGCGAGGCCTCGCGCGAACTGAGGCGTCGGCGTTTCCTGCAGATGCTGGCGATGATGGTCGTGCTCGGGGCCG GGGTCATTCTGTTGGCCGACGCCTATATAAGCCGGGTGATCGAGCGCCAGCATTTGCGCAACCAGTATCTGGGCCAGGCGACGGCACGCCTGGATGAGCA GATCGCCAGCATCCAGGGGCTCAAGGCGCAACGACAGCAGTTGCTCGAACGCATGGGCATCATCGAAGAGCTGCAGGGCAACCGCTCCAACAGTGTGCGG ATTTTTCAGCAGTTGGCCCGCAGCCTGCCTGATGGCGTGTACTTCACCGAGGTGGATCTGCAGGGGCAGAACCTTGGAATCAGCGGTGCCGCCGAGTCAA ACAACAGGGTGTCCGACCTGATGCGCAATCTGCAGGCTGCCGAGGGTTTTGCTGCCCCCAGCCTGACCGAGGTGAAGAACGCGGTGGACGCCCAGCAAGG GCTGAACAACCTGTTCCGGCTGAATGTCGGGCAGACGCCCGGGCCAGCCGGGGAGCTTCGGCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCCCGACAATGGCTGGCAGAGTTGCGGCGTATCGATCTGCGGGAGCTGGAGCTGGCCAACCTGGGCTCGTGGCCCGGGCCGGCCAGGAGTCTGGTGGC GGCCCTGCTTCTGCTGCTGGTTCTGCTAGTGGGCTACGGCTTTTACCTGAGCCCGCACCTGGAGCAACTGGAGCGCCAGCGCCAGGAGGAAACTCGTCTC CGGCAGGAGTTTGCCGGCAAGGCGCGCCAGGGAGCCAATTTGCCGCGCTACCAGGAGCAGTTGGCCGTCATACGCAACAGCTTCGACCTGCTGTTGCGTC AGTTGCCCAGCGACACCGAGGTCCCCGGCCTGCTGGAGGACATCAGTCGCGTGGGGCTGGGCAGTGGCCTGGCCTTCGAGGAAATCAGGCTGCAACCGGA GGTGGCCAGGCAGTTCTACGTCGAGTTGCCGATCCAGATTACTGTCACCGGGGCCTATCACGACCTGGCGAGCTTCGTCAGTGGCGTCGCCGGCCTGCCG
Amino Acid Sequence
>type IV pilus biogenesis protein PilN
MARINLLPWREASRELRRRRFLQMLAMMVVLGAGVILLADAYISRVIERQHLRNQYLGQATARLDEQIASIQGLKAQRQQLLERMGIIEELQGNRSNSVR IFQQLARSLPDGVYFTEVDLQGQNLGISGAAESNNRVSDLMRNLQAAEGFAAPSLTEVKNAVDAQQGLNNLFRLNVGQTPGPAGELRQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site