Pseudomonas protegens Pf-5, PFL_0432 (phaC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGCATCGCGCCGCTGATCTATGGCGGCTCCTTCCGCCGCGACCCGAGCCTGGCAGCGGAACACGCAGCCAAGGTGCGCTCGGCCGGCAAGCTCGGCTA TTACTGGCAGCTGTTCGCGGGCCTGGGCTGGACCAGCATTCACTGGCTGCACAAGATCCATCAGCCGACCCTGGTGCTGGCCGGCGATGACGACCCGCTG ATTCCCCTGATCAACATGCGCATGCTGGCCTGGCGCATACCCAATGCCCAGTTGCACATCATCGATGATGGCCACCTGTTCCTGATCACCCGGGCCGAGG CCGTCGCCCCGATCATCATGAAGTTCCTCCAGGAAGAACGCCAAAGGGCGGTGATGCACCCGCATCCCGAACCTGTGCGCCCTACCAAGTAAAAGATACC TGTCGACAGGATCGTCGCGCGCAAGAAGGGCCAGGACCGACTATGTTGTCTGTCTTGGATTGGTCTGCTTGTTAGTGGTTTGACGAAGGAGTGTTGACTC
|
|
| DNA Sequence for Gene |
>PFL_0432
|phaC
ATGCAAGACAAACCTGCGACGGGCTCATTGCCGTCACCCGCCGCGTATATCAATGCGCAGAGCGCGATCACCGGCCTGCGCGGCCGGGACCTGTTCTCCA CCTTGCGCAGCCTGGCGGCCCACAGCCTGCGCAATCCGTTGCACAGTGCCCGGCATACCCTGGCCCTGGGCGGCCAGCTGGGGCGTGTGCTGCTGGGGGA AACCCTGCACAAGACCAACCCCAAGGACAACCGCTTCGCCGACCCGGCCTGGAGCCTCAACCCCTTCTACCGGCGCGGCCTGCAGGCCTACCTGAGCTGG CAGAAGCAGGTGCGCCACTGGATCGACGACAGTGGCATGAGCGAGGACGACCGGGCGCGGGCACACTTTGCCTTTTCCCTGCTCAATGATGCCGTTGCGC CTTCCAATACCCTGCTCAACCCCCTGGCCCTCAAGGAGATCTTCAACACCGGGGGCAACAGCGTGGTGCGGGGCATCGGCAACCTGCTGGATGACCTGCT GCACAACAACGGGTTGCCCAGCCAGGTGACCAAGCACGCCTTCGAGGTGGGCAAGAACCTGGCGGTCACCCCGGGCTCAGTGGTGTTTCGCAATGAATTG CTGGAGCTGATCCAGTACAGCCCCATGAGCGAAAAACAGTACGCCAAGCCGCTGCTGATCGTGCCGCCGCAAATCAACAAGTACTACATTTTCGACCTGA GCCCGACCAACAGCTTCGTCCAGTACGCGCTGAAAAACGGCCTGCAGGTGTTCATGGTCAGCTGGCGCAACCCGGATGTGCGGCACCGCGAGTGGGGCCT GTCGACCTACGTCGAGGCGGCCGAAGAAGCGCTGAACGTCACCCGGGCGATTACCGGCAGTCGCGAAGTCAACCTGGTGGGAGCCTGTGCCGGAGGGCTG ACCATCGCTGCCCTGCAAGGCCATCTGCAGGCCAAGCGCCAGCTGCGCCGGGTATCCAGCGCGACCTACATGGTGAGCCTGCTGGACAGCCAGATGGACA GCCCGGCAACGCTGTTCGCCGACGAGAAGACCCTCGAAGCGGCCAAGCGTCGCTCCTATCAGCAAGGGGTACTGGACGGTCGCGACATGGCCAAGGTGTT CGCCTGGATGCGCCCCAACGACCTGATCTGGAACTACTGGGTCAACAACTACCTGCTGGGCAAGGAGCCGCCGGTCTTCGACATTCTCTACTGGAACAAC GACAGCACCCGGTTGCCGGCCGCGCTGCACGGCGATCTGCTGGACTTCTTCAAGCACAACCCCCTGAGCCATGTCGGCGGGCTGGAAGTCTGCGGCACGC CGATCGACTTGCAGAAGGTCACGGTGGACAGCTTCAGCGTGGCCGGGATCAACGACCACATCACGCCCTGGGACGCGGTCTACCGCTCGACCCTGCTGCT GGGCGGCGAACGGCGCTTCGTGCTGTCCAACAGCGGCCACGTGCAGAGCATCCTCAACCCGCCGAGCAATCCCAAGGCCAATTACGTGGAGAACCGCAAG CTCAGCAGCGACCCGCGGGCCTGGTACTACGATGCCGAGCATGTGGACGGCAGCTGGTGGAGCCAGTGGCTGACCTGGGTCCAGGAGCGTTCGGGGGCGC AGCGGGAAACCCTCACCACCCTGGGCAACCAGAACTATCCGCCGATGGAGGCTGCGCCCGGCACCTACGTGCGCGTGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGACACTTTGCACCACGGTTCCACGCCGGAGCCGTGCCCCTTCAATGGACCGACAAGAAGTCAGGATGAAGACCCGCGACCGGATACTCGAATGTGCCCT GCAACTGTTCAATCAAAAGGGCGAGCCCAATGTCTCCACCATGGAGGTGGCCAATGAAATGGGGATCAGCCCCGGCAACCTCTACTACCACTTCCATGGC AAGGAGCCGCTGGTGCTCGGCCTGTTCGAGCGCTTTCAGAACGAACTGACGCCGTTGCTGGACCCACCGTCCGACGTCCAGCTGGCGGCGGAAGACTACT GGCTGTTCCTGCACCTGATCGTCGAGCGCCTGGCCCACTACCGCTTTCTGTTTCAGGACCTGTCCAACCTGGCCGGGCGCCTGCCAAAACTGGCCAAGGG CATTCGCAACCTGCTCAATGCCTTGAAACGCACCCTGGCCTCGTTGCTGGCCCGGCTCAAGGCTCAGGGGCAACTGGTCAGCGGCACCCAGGCCCTGGGG
|
|
| Amino Acid Sequence |
>poly(3-hydroxyalkanoate) synthase 2
MQDKPATGSLPSPAAYINAQSAITGLRGRDLFSTLRSLAAHSLRNPLHSARHTLALGGQLGRVLLGETLHKTNPKDNRFADPAWSLNPFYRRGLQAYLSW QKQVRHWIDDSGMSEDDRARAHFAFSLLNDAVAPSNTLLNPLALKEIFNTGGNSVVRGIGNLLDDLLHNNGLPSQVTKHAFEVGKNLAVTPGSVVFRNEL LELIQYSPMSEKQYAKPLLIVPPQINKYYIFDLSPTNSFVQYALKNGLQVFMVSWRNPDVRHREWGLSTYVEAAEEALNVTRAITGSREVNLVGACAGGL TIAALQGHLQAKRQLRRVSSATYMVSLLDSQMDSPATLFADEKTLEAAKRRSYQQGVLDGRDMAKVFAWMRPNDLIWNYWVNNYLLGKEPPVFDILYWNN DSTRLPAALHGDLLDFFKHNPLSHVGGLEVCGTPIDLQKVTVDSFSVAGINDHITPWDAVYRSTLLLGGERRFVLSNSGHVQSILNPPSNPKANYVENRK LSSDPRAWYYDAEHVDGSWWSQWLTWVQERSGAQRETLTTLGNQNYPPMEAAPGTYVRVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|