Pseudomonas protegens Pf-5, PFL_0276 (ompR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGAGGCTGCCGGTGACTTCTTTCCGGTAGCGGGCGATGAAGGGCACGGTGGAGCCTTCATCCAATAGAGCGACGGCCGCTTCGACCTGTTGTGGGCGT ACGCCGAGTTCCTCGGCAATGCGGCTGTTGATGCTGTCCATAAAACCACCTGACAAATTGTGAAAGCAGGCCCGCGGGCACGAAAATAAGGCCCGGCGAG TCTGGTTGAGCGGCCTGGCACGCGCCGCCACCTGGATCAAAAGGCTGCCTGTTGACCCGTGAAATCGAAAAAATACTGCCGGCCCGGGTAAAAAAATAAA CCGGCCGCAGGCGTACTGATCAGATATTGCCCAACACAAAAGGCGGCGCATTATACCCAGCGTTAGCCGTTGCGGGGTGATCGCCAGCCTCAGGCCGACA GCGGGTTTGCTGGCGATAGAGGAAAAATCTGCTAACAATGCACTCGGTGCGTATAACGGCAGCTACGCCATAATGCGCACCGAGATTAGAGGAGCATCCA
|
|
| DNA Sequence for Gene |
>PFL_0276
|ompR
ATGAGCAGCACTGTACAAACTGCTGAAGGCGAAAAAATTCTTATTGTTGACGACGACCCGGGGCTGAGCAGCCTGCTGGAGCGTTTCTTCGTCAGCAAGG GCTACCGTGCCCGCGCAGTACCGAACACCGAGCAAATGGACCGCCTGCTGGGTCGCGAAGTGTTCAACCTGGTGGTACTCGACCTGATGCTGCCCGGCGA AGACGGCTTGACCGCATGCCGCCGCCTGCGCAGCGCGAACAACCAGATTCCGATCATCATGCTCACCGCCAAGGGCGACGAGCTGAGCCGCATCAAGGGC CTGGAACTGGGCGCCGACGATTACCTGGCCAAGCCGTTCAACCCCGACGAGCTGATGGCGCGGGTCAAGGCCGTATTGCGTCGCCAGTCCGCCCCGGTGC CGGGTGCGCCGGGCAGCGAAGACGAAAGCGTGACCTTCGGCGACTACGAGTTGTCCCTGGCCACCCGCGAGCTCAAGCGCGGCAATGAAGTGCACATGCT CACCACCGGTGAATTCGCGGTGCTCAAGGCGCTGGTGATGAACGCCCGCCAGCCGCTGACCCGGGACAAGTTGATGAACCTGGCCCGTGGTCGCGAATGG GACGCCCTGGAGCGCTCCATTGACGTGCAGATCTCCCGCCTGCGTCGGATGATCGAGCCCGATCCTTCCAAGCCGCGCTACATCCAGACCGTCTGGGGCG TGGGTTATGTCTTTGTGCCGGATGGCACCGCGACCAAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCATTGATTTGTAGGAGCCAACGCCCGGGCCGGTAACGACCCGGGCGTTCGCATTCCGCAACGGTGCGAGCGCGAGTCGCTCCTGCAAAGTGTGTAGTGG CTGTTATGAAAACCCCGCTGTGGTTCCCCCAGAGTTTCTTCTCCCGCACCCTGTGGCTGGTGCTGATTGTGGTGCTGTTTTCCAAGGCATTGACCCTGGT TTATCTGTTGATGAACGAGGACGTGCTGGTGGACCGGCAGTACAGCCACGGCGTGGCCCTGACCCTGCGCGCCTACTGGGCCGCCGATGAATCCAACCGT GACCAGATCGCCGAGGCTGCCGGCCTGATCAAGGTGGTGGGCAGCGGCGTACCGGCCGGCGAGCAGCATTGGCCCTACAGCGAGATCTACCAGCGGCAGA TGCAGGCCGAACTGGGCGCCGACACCGAAGTGCGCCTGCGCATGCATGCGCCGCCGGCGCTCTGGGTGCGGGCACCGAGCCTTGGGGACGGCTGGCTCAA
|
|
| Amino Acid Sequence |
>osmolarity response regulator
MSSTVQTAEGEKILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLTACRRLRSANNQIPIIMLTAKGDELSRIKG LELGADDYLAKPFNPDELMARVKAVLRRQSAPVPGAPGSEDESVTFGDYELSLATRELKRGNEVHMLTTGEFAVLKALVMNARQPLTRDKLMNLARGREW DALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDGTATK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|