Pseudomonas protegens Pf-5, PFL_0248

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00079
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015276 ligand-gated ion channel activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00079
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 128 220 8.0E-70
PANTHER PTHR35936 MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F - - 11 262 9.5E-59
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 41 262 4.3E-82
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 42 260 1.1E-69
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 15 262 7.24E-74
Coils Coil Coil - - 260 265 -
SMART SM00079 GluR_14 IPR001320 Ionotropic glutamate receptor, C-terminal 41 261 0.0016
Gene3D G3DSA:3.40.190.10 - - - 38 257 8.0E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.