Pseudomonas protegens Pf-5, PFL_0020 (rsmB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAAGGTCAGCACCCCGATCAGCGCCGAAGATACCGGCGGCAGCCTCCACGACCGCCTGGCCGAGATGGGCCCGCCCGCAGTGCTGCAAGCCATCGAAG GCCTGGCCGCCGGCACCCTGGAAGGCGAAGTCCAGGACGACAGCCTGGCCACTTACGCCCACAAGCTGAACAAGGACGAGGCGCGCATCGACTGGAGCCG CCCGGCCGTGGAACTGGAGCGCCTGGTGCGGGCCTTCAACCCCTGGCCGATCTGCCACAGCAGCTTGAATGGCGAAGCGCTGAAAGTGCTGGCCGCCACC CTGGCCGAAGGCAAGGGCGCGCCGGGGGAAATCCTCGGCGCCAGCAAGGACGGCCTGATCGTTGCCTGCGGTGAGCAGGCGCTGTGCCTGACCCGCCTGC AACTGCCCGGGGGCAAGGCGCTGAACTTCAGCGACCTGTTCAACAGCCGCCGCGAGAAATTCGCCATCGGCACCGTCCTCGGCCAGACGGCGGACGCCCA
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| DNA Sequence for Gene |
>PFL_0020
|rsmB
ATGAACCCGCGCCTGGCCGCCGCAAAGGCGCTGACTGCCGTGCTCAACGGCAAGGCCTCGCTCAACAGCTCGCTGCCGATCCAGCTGGACAAGGTCGAGG CCCGTGATCGCGGCTTCACCCAGGACCTGGCCTTCGGCACCGCACGCTGGCAGCCGCGGCTGTCGGCGCTGGCGGCCAAGCTGCTGCAGAAGCCGTTCAA GGCAGCCGACGCCGATGTCGAAGCATTGCTGCTGGTGGGCCTCTATCAGTTGCTCTACGCCCGGGTTCCGGCCCACGCCGCCATCGGTGAAACCGTGGGC TGCGCCGACAAGCTGAAAAAGCCCTGGGCCAAGGCCCTGCTCAATGCCGTGCTGCGGCGCGCCCAACGCGAAAGCGAAACGCTGCTGGCCGAGTTGGAGC ACGACCCGGTGGTGCGCACCGCACACCCGCGCTGGTTGCAGAAATCCCTCAAGGCGTTCTGGCCCGAGCAGTGGGAAGCCATCTGCGCCGCCAACAACGC CCACCCGCCGATGATCCTGCGGGTCAACCGCCGGCATCACTCCCGCGATGCCTACCTGAAGCTGTTGAGCGAAGCGGGGGTTGCGGCCAAGGCTTGCGTC TATAGCCAGGACGGCATCGTCCTCGACGAAGCCTTGGATGTACGCAGCCTGCCGGGCTTTGCCGAAGGCTGGATCAGTGTGCAGGACGAGGCCGCGCAAC TGGCCGCCGAGCTGCTGGAACTGGCGCCGGGGCAACGGGTGCTGGACGCCTGCTGCGCCCCGGGCGGCAAGACCTGCCACATCCTCGAAGTGCAACCGGC CCTGGCCGGCGTAGTGGCGGTGGACCTGGAGGCCAAGCGCCTGGTGCGGGTACGGGAAAACCTCGACCGCCTGGGGCTCGACGCCCAATTGATCGCCGCC GATGGCCGCGACACCCAGGCCTGGTGGGACGGCAAGCCGTTCCAGCGGATCCTGCTGGACGCGCCATGCTCGGCCACCGGGGTGATCCGCCGCCATCCGG ATATCAAGCTGACCCGCCAGCCCGAAGACATCGCCGCCCTGGCGCAACTGCAAGGCGAACTGCTGGATGCCATGTGGCAGGCCCTGGAAGTGGGCGGCAT CCTGCTCTACGCCACCTGCTCGACCCTGCCCACCGAGAACACCGAGGTCATCGAGGCCTTCCTGGCCCGCACCCCGGGGGCTCGTGAATTGGACATCGGC GGCCAACTGGGGCAGCCTGCCGCCGGCCTCAAGCAGCCCCACGGACGCCAGTTGCTGGCGCAAGAGGGCGGCCACGACGGCTTCTACTACGCCAAGCTGA TCAAGATCGCCGCAGCTCGCGGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGTTTTAAGGGAGTGACTGGATGAAAATCATCATCCTCGGCGCCGGGCAAGTGGGTGGCACGCTGGCGGAACACCTGGCCAGCGAAGCCAACGATATC ACCGTGGTCGACACCGACGGCGAACGCCTGCGCGACCTCGGCGACCGCCTGGACATCCGCACCGTGCAGGGCCGCGCCTCGTTCCCGACGGTGCTGCGCC AGGCCGGCGCCGACGACGCCGACATGCTGGTGGCGGTAACCAACAGCGACGAGACCAACATGGTCGCCTGCCAGGTGGCCCACACCCTGTTCCACACCCC GACCAAGATCGCCCGGGTGCGCGAAGCCGCCTACCTGACCCGCGCCGGGCTGTTCGACAACGATGCGATCCCGGTGGACGTGCTGATCAGCCCCGAGCAG GTGGTGACCAACTACATCAAGCGCCTGATCGAGCACCCCGGTGCGCTGCAGGTGATCGACTTCGCCGAAGGCAAGGCGCAACTGGTGGCGGTCAAGGCCT
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| Amino Acid Sequence |
>16S rRNA methyltransferase GidB
MNPRLAAAKALTAVLNGKASLNSSLPIQLDKVEARDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLLYARVPAHAAIGETVG CADKLKKPWAKALLNAVLRRAQRESETLLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHSRDAYLKLLSEAGVAAKACV YSQDGIVLDEALDVRSLPGFAEGWISVQDEAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVQPALAGVVAVDLEAKRLVRVRENLDRLGLDAQLIAA DGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPEDIAALAQLQGELLDAMWQALEVGGILLYATCSTLPTENTEVIEAFLARTPGARELDIG GQLGQPAAGLKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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