Pseudomonas protegens Pf-5, PFL_0013 (glyS)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGCAAGCCGGTGGCATCGAGTGCTACCCGGTGACCGGTGAAATCACCTATGGCCTGGAACGCCTGGCCATGTACCTGCAGGGCGTGGATTCGGTATACG ACCTGGTGTGGGCCGACGGCCCGTTCGGCAAGGTCACCTATGGCGATGTGTTCCACCAGAACGAAGTGGAGCAGTCGACCTACAACTTCGAACACGCCAA CGTCGAGAAGCTGTTCGAACTGTTCGATTTCTACGAAAGCGAAGCCAAGCGCCTGATCGAGCTGGATCAGCCACTGCCGCTGCCGAGCTATGAAATGGTC CTCAAGGCCTCGCACACCTTCAACCTGCTGGATGCACGCCGGGCCATCTCGGTCACCGCACGCCAGCAGTACATCCTGCGTGTGCGCACCCTGGCGCGTT CCGTTGCGCAAGCCTACCTGCTGGCCCGTGCCAAGCTGGGCTTCCCGATGGCAACCCCGGACCTGCGTGATGAAGTGTTGGCTAAGTTGGAGGCGGCACA
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| DNA Sequence for Gene |
>PFL_0013
|glyS
ATGAGTGCGCAAGATTTTCTGGTTGAACTGGGCACTGAAGAACTGCCACCCAAAGCCCTGAACACCCTGGCCGAAGCCTTTCTGGCCGGCATCGAAAAAG GCCTGCAGAGCGCCGGCCTGAGCTTCCAGGCCAAGCACGTATACGCCGCGCCACGGCGCCTGGCGGTGCTGATCACCCAACTGGCCACCCAGCAGCCGGA TCGCAGCATCAACCTCGACGGCCCGCCACGCCAGGCAGCCTTCGATGCTGAAGGCAACCCGACCCAGGCGGCCCTCGGCTTTGCCAAGAAGTGCGGCGTC GAACTCAGCGAGATCGACCAGAGCGGCCCGAAACTGCGCTACAGCCAGAGCATCAAGGGCAAGCCGACCGCCAGCCTGCTGCCGACCATCGTCGAAGATT CGCTGAACGACCTGCCGATTCCCAAGCGCATGCGCTGGGCCGCGCGCAAGGAAGAGTTCGTGCGCCCGACTCAATGGCTGGTGATGCTGCTGGGCGATGA GGTCATCGACTGCACCATCCTCGCCCAGAAGGCCGGTCGCGACTCCCGCGGCCACCGCTTCCACCACCCGCAAAGCGTGCGCATCACCGCGCCGGCCAAC TACCTGGCCGACCTGCGTGCCGCCTACGTGCTGGCCGACGCCAACGAGCGTCGCGAGCTGATCAGCAAGCGCACCGCGGAACTGGCGACCCTGCAGGAAG GCACGGCGATCGTCCCCGCGGACCTGCTGGACGAAGTGACTGCCCTGGTCGAATGGCCGGTGCCACTGGTGTGCTCGTTCGAGGAGCGCTTCCTCGAAGT GCCCCAGGAAGCCCTGATCACCACCATGCAGGACAACCAGAAGTACTTCTGCCTGCTGGACGTGGACGGCAAGCTGCTGCCGCGCTTCATCACCGTGGCC AACATCGAGAGCAAGGACCCGCGCCAGATCATCGAGGGCAACGAGAAAGTCGTGCGCCCACGCCTGACCGACGCCGAGTTCTTCTTCAAGCAGGACAAGA AGCAGAAGCTCGAAGACTTCAACCTGCGCCTGCAGAACGTGGTCTTCCAGGAAAAACTCGGCAGCGTCTACGACAAGGCCGAGCGGATCTCCAAGCTGGC CGCCTTCATTGCCCCGCGCATCGGCGGCGACGCCCAGCGCGCCGCCCGTGCCGGCCTGCTGTCCAAGTGCGACCTGGCCACCGAGATGGTCGGCGAGTTC CCGGAGATGCAAGGTATCGCCGGCTACTACTACGCCCTCAATGACGGCGAGCCGGAAGATGTCGCCCTGGCCCTGAACGAGCAGTACATGCCACGTGGCG CCGGCGCCGAGCTGCCCAGCACCGTGACCGGTGCCGCCGTGGCCATCGCCGACAAGCTGGACACCCTGGTGGGGATCTTCGGCATCGGCATGCTGCCCAC CGGCAGCAAGGACCCCTACGCCCTGCGTCGCGCGGCACTGGGCGTGCTGCGGATCCTGATCGAGAAGAAGTTCGACCTCGACCTGAACGACGCCGTGGCC TTCGCCGTCAGCGCCTTCGGCAGCAAGGTCAAGGCCGCCGGCCTGGCCGACCAGGTGCTGGAGTTCATCTTCGACCGCCTGCGTGCCCGTTACGAAGACG AAGGCGTGGATGTAGCCACCTACCTCTCGGTGCGTGCCCTGAAGCCGGGTTCGGCCCTGGACTTCGACCAGCGCGTGCAAGCCGTGCAGGCCTTCCGCAA GCTGCCGGAAGCCGCCGCCCTGGCTGCGGTGAACAAGCGCGTGTCGAACCTGCTGAGCAAGATCGAAGGCAATGTGCCGACCACCATCGAAGCCAAGTAC TTCGACAACGCCAACGAGTTCTCCCTGTACTCGGCGATCCAGCAGGCGGACCAGGCGGTACAGCCTATGGCCGCAGCTCGTCAGTACAGCGAGACCCTGG CCCGCCTGGCCGCCCTGCGCGAACCAGTGGACGCCTTCTTCGAAGCGGTGATGGTCAATGCCGAGGACGCCAAGGTACGGGCCAACCGCTACGCGCTGCT GGCGCGGCTGCGGGGCCTGTTCCTGGGCGTGGCCGACATTTCGGTACTGAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGTAGGGAACTGCTGTGAAACTGCTGATACTCGATCGTGACGGCGTGATCAATCACGACTCCGATGCCTACATCAAATCGGTGCAGGAGTGGATTCC GCTCCCCGGCGCGATCGAAGCCATTGCGCAGTTGAGCAAGGCCGGCTGGACGGTGGCGATCGCCACCAACCAGTCCGGCATCGCTCGCGGCTACTACGAC CTGGCCACCCTCGATGCCATGCACGCGCGCCTGCGCGAACTGGTGGCGGAGCAGGGCGGCGAAGTCGGGCTGATCGTCTATTGCCCCCATGGGCCCGACG AAGGGTGCGCCTGCCGCAAACCGAAACCGGGCATGCTGCGAACCATTGCCGAGCATTACCAGGCAGAACTGACAGGTCTATGGTTTGTCGGTGACAGTCT CGGTGACCTGGAAGCCGCAAAAGCCGTCGACTCTCAGCCAGTATTGGTAAAGACCGGGAAAGGCGAAAAGACTCTGGGGAAAACCCTGCCGGTAGGCACC
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| Amino Acid Sequence |
>glycyl-tRNA synthetase subunit beta
MSAQDFLVELGTEELPPKALNTLAEAFLAGIEKGLQSAGLSFQAKHVYAAPRRLAVLITQLATQQPDRSINLDGPPRQAAFDAEGNPTQAALGFAKKCGV ELSEIDQSGPKLRYSQSIKGKPTASLLPTIVEDSLNDLPIPKRMRWAARKEEFVRPTQWLVMLLGDEVIDCTILAQKAGRDSRGHRFHHPQSVRITAPAN YLADLRAAYVLADANERRELISKRTAELATLQEGTAIVPADLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDVDGKLLPRFITVA NIESKDPRQIIEGNEKVVRPRLTDAEFFFKQDKKQKLEDFNLRLQNVVFQEKLGSVYDKAERISKLAAFIAPRIGGDAQRAARAGLLSKCDLATEMVGEF PEMQGIAGYYYALNDGEPEDVALALNEQYMPRGAGAELPSTVTGAAVAIADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIEKKFDLDLNDAVA FAVSAFGSKVKAAGLADQVLEFIFDRLRARYEDEGVDVATYLSVRALKPGSALDFDQRVQAVQAFRKLPEAAALAAVNKRVSNLLSKIEGNVPTTIEAKY FDNANEFSLYSAIQQADQAVQPMAAARQYSETLARLAALREPVDAFFEAVMVNAEDAKVRANRYALLARLRGLFLGVADISVLS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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