Pseudomonas protegens Pf-5, PFL_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01898
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00822 TopoII_Trans_DNA_gyrase - - 221 378 1.4696E-72
PRINTS PR00418 DNA topoisomerase II family signature - - 526 538 2.9E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 37 52 2.9E-71
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 392 592 5.0E-122
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 705 804 1.9E-48
FunFam G3DSA:3.10.20.690:FF:000002 DNA gyrase subunit B - - 594 683 4.4E-35
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 221 243 5.9E-75
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 4 805 100.399879
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 222 393 3.22E-58
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 221 393 4.4E-78
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 395 795 2.28E-87
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 774 790 5.9E-75
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 37 798 0.0
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 33 177 3.0E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 375 395 5.9E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 471 480 5.9E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 758 770 5.9E-75
PRINTS PR00418 DNA topoisomerase II family signature - - 72 85 2.9E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 421 435 2.9E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 737 753 2.9E-71
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 4 221 5.8E-95
CDD cd16928 HATPase_GyrB-like - - 38 217 4.84504E-105
PRINTS PR00418 DNA topoisomerase II family signature - - 488 504 2.9E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 361 375 5.9E-75
PRINTS PR00418 DNA topoisomerase II family signature - - 115 129 2.9E-71
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 400 587 1.5E-67
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 565 730 8.6E-54
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 313 329 5.9E-75
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 419 533 6.65176E-77
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 34 175 1.1E-21
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 3 804 0.0
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 222 391 8.2E-56
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 4 220 1.8E-95
PRINTS PR00418 DNA topoisomerase II family signature - - 269 282 2.9E-71
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 222 399 1.1E-65
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 702 805 2.0E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 197 210 5.9E-75
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 7 804 0.0
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 7 219 4.98E-74
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 733 794 4.4E-30
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 182 197 5.9E-75
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 7 17 5.9E-75
Gene3D G3DSA:3.10.20.690 - - - 593 683 8.9E-26
PRINTS PR00418 DNA topoisomerase II family signature - - 506 523 2.9E-71
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 420 531 1.9E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.