Pseudomonas aeruginosa AZPAE15017, NT33_RS23460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE15017 AZPAE15017_contig_23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGTCCTCGGCATCCTCTACGAGAGCTACGTGCACCCGCTGACCATCCTCTCGACCCTGCCTTCGGCCGGGGTCGGCGCGCTGCTCGCGCTGATCCTCT GCCGCAGCGAGCTGAGCCTGATCGCGCTGATCGGCATCATCCTGCTGATCGGCATCGTCAAGAAGAACGCGATCATGATGATCGACTTCGCCCTGGAGGC CGAGCGCAACCACGGCCTGAGCCCGCGCGAGGCGATCCTCGAGGCCTGCATGATGCGCTTCCGGCCGATCATGATGACCACCCTGGCCGCCTTGCTCGGC GCCTTGCCGCTGATCTTCGGCATCGGCGGCGACGCCGCGCTGCGCCGGCCGCTGGGCATCACCATCGTCGGCGGGCTGATCGGCAGCCAGTTGCTGACCC TGTACACCACCCCGGTGGTCTACCTCTATCTCGACCGCCTGCGCCACTGGGTCAACCAGAAACGCGGCGTACGCACGGACGGTGCGCTGGAGACACCCCT
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| DNA Sequence for Gene |
>NT33_RS23460
ATGAAACACACCCCCTCGTTGCTCGCCCTGGCCCTGGTCGCCGCCCTCGGCGGCTGCGCCATCGGCCCCGACTACCAGCGACCGGACCTGGCGGTGCCCG CCGAATTCAAGGAAGCCGAAGGCTGGCGCCGCGCCGAGCCGCGCGACGTGTTCCAGCGCGGCGCCTGGTGGGAGCTGTACGGCGACCAGACCCTGAACGA CCTGCAGATGCACCTGGAACGTTCCAACCAGACCCTGGCCCAGTCGGTGGCGCAGTTCCGCCAGGCCGAGGCGCTGGTGCGCGGCGCGCGGGCGGCGTTC TTCCCGTCGATCACCGGCAACGCGGGCAAGACCCGCAGCGGCCAGGGCGGCGGCGATAGCACCGTGCGCCTGCCCGACGGCTCCACTGTGAGCAGCGGCG GTGGTTCCGGTGCGATCAGCAACAGTTACTCGACCAGCCTCGGCGTCAGCTGGGAGGTCGACCTCTGGGGCAAGCTGCGCCGGCAACTGGAGGCCAACCA GGCGAGCCTGCATGCCAGCGCCGCCGACCTCGCCGCGGTGCGCCTCAGCCAGCAGTCGCAACTGGCGCAGAACTACCTGCAACTGCGGGTGATGGACGAA CAGATCCGCCTGCTCAACGACACGGTGACGGCCTACGAGCGTTCGCTGAAGGTGGCCGAGAACAAATACCGCGCCGGCATCGTCACCAGGGCCGACGTGG CCCAGGCCCGCACCCAGCTGAAAAGCACCCAGGCCCAGGCCATCGACCTGAAGTACCAGCGCGCCCAGCTGGAGCACGCCATCGCCGTGCTGGTCGGCCT GCCGCCGGCGCAATTCAACCTGCCGCCGGTGGCGAGCGTGCCGAAGCTGCCGGACCTGCCGGCAGTGGTGCCGTCGCAATTGCTCGAACGGCGGCCGGAC ATCGCCTCGGCGGAGCGCAAGGTGATTTCCGCCAACGCCCAGATCGGCGTGGCCAAGGCCGCCTATTTCCCCGACCTCACCCTGAGCGCCGCCGGCGGCT ACCGCAGCGGCAGCCTGAGCAACTGGATCAGCACGCCGAACCGCTTCTGGTCGATCGGCCCGCAGTTCGCCATGACCCTGTTCGACGGCGGCCTGATCGG CTCCCAGGTGGACCAGGCCGAGGCGACCTACGACCAGACCGTGGCGACCTACCGGCAGACCGTGCTCGACGGTTTCCGCGAGGTGGAGGACTACCTGGTG CAATTGAGCGTCCTCGACGAGGAGAGCGGGGTGCAGCGCGAAGCCCTGGAGTCGGCCCGCGAGGCGCTGCGCCTGGCCGAGAACCAGTACAAGGCCGGCA CCGTCGACTACACCGACGTGGTCACCAACCAGGCCACCGCGCTGAGCAACGAACGCACCGTGCTGACCCTGCTCGGCAGCCGCCTGACCGCCAGCGTCCA GTTGATCGCGGCAATGGGCGGCGGCTGGGACAGCGCCGACATCGAGCGGACCGACGAGCGACTCGGCCGGGTCGAGGAGGGCCTGCCGCCTTCCCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTCTTCTCGCTGCCTGTTCCTGACGAATGCCTTTCCCCGCTATTGCGCTTGCATGACACACCGCCGTCCGCCTCTCGGCTAGAGTGCGGCGGCGGATGT GGAGGTGAATACGTGTCGGGGAAGTTTCCGGAAAAGCCCTCGCGCCGAGGCTACTGGCTCGGCTGGCTGTGCCGCCTGGCCATGCTTGGCGGCGTCGCCG CGATGTTCTGGGCGCTGCTGCAATGCTTCGCCCTGCTGCACGGCGAACCGCCGCTCCAGCGCGCCCCGCTGCGGACGCCCTGGACCCTGCTGGCGCTCGG CCTGGCGCTGTTCCTCGCCGGTTTCTGCGGCGAGTACCGGCTGTGGCGGCGCCGCGCCGGTTGCTGAAACCGGCGTCAGGCAGCGCCCGTCGAAGGGAAC AGCAGGCGCAGGTGGGTCTTCTGCTGCGGTACGCTTTCCGCTTCGGCGCGGCCGCCGTGGTAGGCCATGATCGATTGCACGATGGCCAGCCCCAGGCCGG
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| Amino Acid Sequence |
>RND transporter
MKHTPSLLALALVAALGGCAIGPDYQRPDLAVPAEFKEAEGWRRAEPRDVFQRGAWWELYGDQTLNDLQMHLERSNQTLAQSVAQFRQAEALVRGARAAF FPSITGNAGKTRSGQGGGDSTVRLPDGSTVSSGGGSGAISNSYSTSLGVSWEVDLWGKLRRQLEANQASLHASAADLAAVRLSQQSQLAQNYLQLRVMDE QIRLLNDTVTAYERSLKVAENKYRAGIVTRADVAQARTQLKSTQAQAIDLKYQRAQLEHAIAVLVGLPPAQFNLPPVASVPKLPDLPAVVPSQLLERRPD IASAERKVISANAQIGVAKAAYFPDLTLSAAGGYRSGSLSNWISTPNRFWSIGPQFAMTLFDGGLIGSQVDQAEATYDQTVATYRQTVLDGFREVEDYLV QLSVLDEESGVQREALESAREALRLAENQYKAGTVDYTDVVTNQATALSNERTVLTLLGSRLTASVQLIAAMGGGWDSADIERTDERLGRVEEGLPPSP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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