Strain | Pseudomonas aeruginosa strain AZPAE15017 AZPAE15017_contig_20, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCTGGAAGTCCGCCAGCCGCGGCAGCAGCCAGCCGACCGTGAAGGTACCGACCGCGCCGACGGTGAGCACGTCCCGGTAGTGGCCGCCCTCGAAACGTTC CAGCAGGCCGGCGATGCGGTCGAAGGAGTCGCACAGCACCGGCAGCAGGCTCTCGCCCTCGTGGGTCAGCATGAGGCCGCGCGGCAGACGCTTGAACAGG GCCACGCCGAGACGCTCCTCGAGGCTCTTCACCTGGTGGCTGACCGCCGCCTGGGTCACGCACAGCTCGATGGCCGCGCGGGTGAAGCTCAGGTGCCGGG CCGAAGCTTCGAAGGCGCGCAGGGCGTTCAGCGGCAAATGGGGTCGAACCAATCTCTGCTCCAAATTTTTCTAATGGCTGCCGCGAGTATTCGTCGTTTG CCGCAAATCCTGCGCAAGCCTAGATTTTCCCCGCCCGCCGATCAAGGAGCGCTCCCGGGGCGGTTTCTCATGCAGCCAACGACAAAGGACGCCAATCCTC
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DNA Sequence for Gene |
>NT33_RS21045
|ampC
ATGCGCGATACCGGATTCCCCTGCCTGTGCGGCATCGCCGCCTCCACACTGCTGTTCGCCGCCACCTCGGCCATTGCCGGCGAGGCCCCGGCGGATCGCC TGAAGACACTGGTCGACGCCGCCGTACAACCGGTGATGAAGGCCAATGATATTCCGGGCCTGGCCGTGGCCATCAGCCTGAAAGGAGAACCGCATTACTT CAGCTATGGGCTGGCTTCGAAAGAGGACGGTCGCCGGGTGACGCCGGAGACCCTGTTCGAGATCGGCTCGGTGAGCAAGACCTTCACCGCCACCCTCGCC GGCTATGCCCTGGCCCAGGACAAGATGCGCCTCGACGACCGCGCCAGCCTGCACTGGCCGGCGCTGCAAGGCAGCCGCTTCGACGGCATCAGCCTGCTCG ACCTCGCGACCTATACCGCCGGCGGCTTGCCGCTGCAGTTCCCCGACTCGGTGCAGAAAGACCAGGCACAGATCCGCGACTACTACCGCCAGTGGCAGCC GACCTACACGCCGGGCAGCCAGCGCCTCTACTCCAACCCGAGCATCGGTCTGTTCGGCTATCTCGCCGCGCGCAGCCTGGGCCAGCCGTTCGAACGGATC ATGGAGCAGCAACTGTTCCCGGCACTGGGCCTCGAACAGACCCACCTCGACGTGCCCGAGGCGGCGCTGGCGCAGTACGCCCAGGGCTACGGCAAGGACG ACCGCCCTCTACGGGTCGGTCCCGGCCCGCTGGATGCCGAAGGCTACGGGGTGAAGACCAGCGCGGCCGACCTGCTGCGCTTCGTCGATGCCAACCTGCA TCCGGAGCGCCTGGACAAGCCCTGGGCGCAGGCGCTCGATGCCACCCATCGCGGTTACTACAAGGTCGGCGACATGACCCAGGGCCTGGGCTGGGAAGCC TACGACTGGCCGATCTCCCTGAAGCGCCTGCAGGCGGGCAACTCGACGCCGATGGCGCTGCAACCGCACAGGATCGCCAGACTGCCCGCGCCACAGGCGC TGGAGGGCCAGCGCCTGCTGAACAAGACCGGCTCCACCAACGGCTTCGGCGCCTACGTGGCGTTCATCCCAGGCCGCGACCTGGGCCTGGTGATCCTGGC CAACCGCAATTATCCCAATGCCGAGCGGGTGAAGATCGCCTACGCCATCCTCAGCGGCCTGGAGCAGCAGGCCAAGGTGCCGCTGAAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GGCGCGCTCGCGAGGGCGACGGAGCGTAGCGGCGCGGGACGCCGGTCCTGGCTATGATGGTGCCATGAGCGCTTCCCCGCCCCTCCGCCAGCCCTGCCCG CCCGGCGCCTGCGTCTGCGAACGCGAGCGCCTGGAGGCGCCCGGCGCGGACCGTCGCATCCTTCTCCTGACCCGCCAGGAAGAGCAGCGCCTGGCCGCTC GCCTGGAAGCCCTGCGCAGCCTGGAAGACCTGGAACACCTGCTGCGGCGCATGGAGGAACAACTGGGCATCCGCCTGCGCATCGCCCCGGCCTTCGGCGA GGTGCGCAGCATGCGCGGCATCCGCATGCGCTTCGAGGAGCAGCCGGGGCTCTGCCGCAAGACCCGCCAGGCGATTCCCGCCGCCATCCGCCGCGGCCTG GAGAAGCGCCCGGAAGTCGCCTACGCCCTGCTCAACGCCCACGACCTGCTGCGCGACGCCTGAAGGCACTGAACGACAGGAAGAGGATGTCGCTCAAGAC
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Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MRDTGFPCLCGIAASTLLFAATSAIAGEAPADRLKTLVDAAVQPVMKANDIPGLAVAISLKGEPHYFSYGLASKEDGRRVTPETLFEIGSVSKTFTATLA GYALAQDKMRLDDRASLHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQAQIRDYYRQWQPTYTPGSQRLYSNPSIGLFGYLAARSLGQPFERI MEQQLFPALGLEQTHLDVPEAALAQYAQGYGKDDRPLRVGPGPLDAEGYGVKTSAADLLRFVDANLHPERLDKPWAQALDATHRGYYKVGDMTQGLGWEA YDWPISLKRLQAGNSTPMALQPHRIARLPAPQALEGQRLLNKTGSTNGFGAYVAFIPGRDLGLVILANRNYPNAERVKIAYAILSGLEQQAKVPLKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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