Pseudomonas aeruginosa AZPAE15017, NT33_RS00960

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 176 223 1.47E-10
Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal 45 98 2.0E-8
Gene3D G3DSA:1.10.10.60 - - - 121 224 3.8E-25
FunFam G3DSA:1.10.10.60:FF:000538 AraC family transcriptional regulator - - 121 224 4.4E-69
Coils Coil Coil - - 162 182 -
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 141 223 4.0E-25
PANTHER PTHR47894 HTH-TYPE TRANSCRIPTIONAL REGULATOR GADX - - 45 224 7.4E-58
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 147 224 2.4E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.