Pseudomonas sp. UW4, PputUW4_05297
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGGCGTTTTCGCGTGACGGCAGGGGGAGGGAAACTATCGCAGGATATTGCCTGCGCTGGAGTGCGGTTTGATCAATGAAGGCTTCGTGGAGTCGAGCA GGTAGTCCTTTTCCTAAAATGTTGAAAGGTCACTGAGAGTCACTCCCTCTTGGTTGCATTTGGCGAGTCAGCTTATACACTCAAGATTAATGCATAACGT TAAGCTTTAAATTATGATCGTTAGCTTTAAGTGTTCTGAGACCGAGTACCTGTTTCGCAACGGTAAGACCCGTATGTGGTCAGCCATTCTGAGCGTCGTG GAACGAAAGCTGACGATGCTTGATGCTGCTGCCGTGTTGATAGACCTTCGATCCCCGCCGGGTAATCGCCTGGAGGCGCTGGAGGGGAATCGAAAAGGTC AGTACAGCATCCGTATCAACGCTCAATGGCGTATTTGCTTCATTTGGGGTCCTAACGGACCAGAGAATGTCGAAATCGTCGATTATCACTGAGGTGAGTA
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| DNA Sequence for Gene |
>PputUW4_05297
ATGACTAAGAATGGTATGCGCCCGGTTCACCCTGGCGAGATCCTCAAAGAGGAATACCTTGAGCCTCTGAGCCTTACGGCTGCCGCTCTGGCAAGAGCAT TGAATGTGTCGACACCTACGGTGAACGACATCGTGCTCCAGCGTCGGGGTGTCAGTGCTGATATGGCTCTAAGGTTATCTATTTGTCTGGACACTACCCC GGAATTTTGGCTGAACCTGCAATCAACTTACGATTTGCGTAAAGCCGAGATTGAACGAGGGGCTGCGATTCGGGATCAGGTTGAGCGGCTTGCACACTGT GCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGTTGTCTTGGATTTTCTGAACCCCACGCCAAAAGCGTGGGGTTTTTATTCAAAGTGCGTGAAGAATCTTCGCGGCTCTTTTCCACCAAGGCGCACTGA AAGCAGGCCTTGAAGTCTCCTGATCAGGCAGCATCTGCGGCACATCCTGCAACCGAATCCACGGCTGGTTATTCCAGTGCAGCAAGCTCAACGACATTTC CGGCCAGTTGAGCAGGCTCAGTTGTGGGCGTTCGGTTGTGGTGGGGTGTTGGGCGTCTCGCAGGGCAGGGACGACTTCGTGGGTGAGCCATTCACGCAAG GCTCGGTATTCGGGGCAGTAGTGGTAGACGAGCATGGCGTAGACACCGGATTCGCTGATCAGCAGGGTGTTTTCGATGCGGCCGTAGATGAGGGTTTGGG TGGTTTGGTATTGGTCGGGATCGAGTTTTTGGACTTGGCGGTCGTTGAGGTGGATGCGTAGTAATCGGCCGAGGTCGCGGGCGCAGAACCAGGGTTGGTT
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| Amino Acid Sequence |
>virulence-associated protein
MTKNGMRPVHPGEILKEEYLEPLSLTAAALARALNVSTPTVNDIVLQRRGVSADMALRLSICLDTTPEFWLNLQSTYDLRKAEIERGAAIRDQVERLAHC A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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