Pseudomonas sp. UW4, PputUW4_04820 (btuF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TAATCGACTCTACCTGGCGACCAAGGCCAGCAAGCTCGACCACATGATGGGCAATGAACATCAGGGCGAGGTAGACCGGGCGTGACTCGCGGTCAGGTTC GGCGGCGACTGTCCGTCAACTGGTGGCAATACCTGGCTCTGGCCCTGTTGCCGCTGTTTGTGATCAACGCGGTGTTCGGCCAGAGCGAAGCCATTCTGCC AATGCTGGCGATGCCGTTGTTCATCGCCGGTGTCGCCTCGATGTTTGTCAGCCTGAAGTTTTTCGGCGCCTACAAACACGCGCTGATCGCCACCCAGAAA GCCCTCGATACCCCTGAAGAACCTGGCGCGTGGATCAGTCTGGCGGCGAAGCGCCGTAAAGCGTTCCTTGCCGCCGGCCTGCCGGCGTGGATCGGTGCCC TGGCGGTGTTCGTCGGGCTCGAAGCGGTGCCGCTGATGTTGCTGGCGCTGTCGACCGCCGTGCTGTTCTACCTCTACCGTATTCCGCGTCAGCTCGGTTG
|
|
| DNA Sequence for Gene |
>PputUW4_04820
|btuF
ATGCGCGCGCTCTGGCTGGCGGTTTTGCTGCTGGCCGCCAGCCGCTCGGCCATCGCGGTCGAGCGGGTCGTCAGTCTTGCACCGTCGCTCTCTGAAATCG TCGTTGAACTGGGTTCTGCCGACCTCCTGGTGGGTGTGCTGGACGCCGGTGAGCGACCTGCCGAACTCAAGAACCTGCCCTCCGTTGGCCGCTATGGCCA GTTGGACATGGAGCGGCTGCTCAGCCTGAAGCCCGATCTGTTGCTGCTATGGCCCGGTAGTATCGGCCCGGCCCAGCGCGACCAGCTCAAGCGCCTGAAC ATTCCCACCTACGTCGCCGAACCCCACAGCCTGGACCAGCTCGCCGCGCAAATCGAGGCCATTGCCGCTCGGCTCGATCGGCCTGAACGCGGCGTTTCAT TGGCCAGCGACTTGCGCCGACGACTGGGCGAACTGCGCCAACGCTATCGACGGGACAAGCCGCTACAGGTGTTCTATCAGGTCTGGGATCGGCCGCTGTA TACGGTTGGTGGCGAGCAGATCATCAGCGACGCGCTGGAGGTCTGCGGAGCCCAAAACGTGTTCGCCGACCTGAAGCTGCCGGCACCGCAAGTCAGCGTG GAAGCCGTGTTGCAGCGTAATCCCGAGGTGATTCTGGCCAGCGATCAGGCGCAGCTCGACGCGTGGAAAGCCTGGCCGCAGGTGGCGGCGGTGGCGCAAG GACAGTTGCGATTGGTCACGGACAAGGGGCTGGAGCGGCCGAGTGGGCAGATGGTCGAGGCGACTGCAAAGCTTTGCCAATTGATCGCGCCTGGACTCTG A
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACCGAGGTGATCTCTTCGCGAGCGGGCTCGCTCCCACAATGGATCTATGTTGTTTACGAGATGTAGGTCGCCGCGATCAACTGTGGGAGCGAGCCTGCT CGCGAAGAGGCCGGTCCAGACAGTACAGATTCCGGATCAGATTCCAGGCGTCCATGTCACCCCGAACATCCACGCCCGACCTTCCTCGCGATACCCGTAC TGGCTGCCCTGGTAGCTGTACAACGCCCGGCTGTAACCCTTGTCCAGCAGGTTGTCGACCTTCAGTTCCAGCCGGACTTCACGATTGAGCTCCCAACTGC TGCGCAGCCCCAGCAAGGCATAGCCGCCGAGGGGCTGTTGATTGTTCTGGTCGTCATAGCTGCTGCTGACCGCTTGCCAACTGGCGCCGAGGCCCAGGCG ATCGAACTGTCGGTCCAGATCCCAACTCAAGGTACGCCGCGCGCGACGGGCCAGGGTGTGGCCCGTGTCACGGTCGCGCGGATCGATGATCGCCACGCCG
|
|
| Amino Acid Sequence |
>vitamin B12-binding protein
MRALWLAVLLLAASRSAIAVERVVSLAPSLSEIVVELGSADLLVGVLDAGERPAELKNLPSVGRYGQLDMERLLSLKPDLLLLWPGSIGPAQRDQLKRLN IPTYVAEPHSLDQLAAQIEAIAARLDRPERGVSLASDLRRRLGELRQRYRRDKPLQVFYQVWDRPLYTVGGEQIISDALEVCGAQNVFADLKLPAPQVSV EAVLQRNPEVILASDQAQLDAWKAWPQVAAVAQGQLRLVTDKGLERPSGQMVEATAKLCQLIAPGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|