Pseudomonas sp. UW4, PputUW4_04326 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTTGCCCGGCGAGCGACCCTGGTTGAGCACCTCGAACAGCACCATGTACCACCAGCTCACCACGAACAGCAGGATCGACCCGAGCCCGGCGCCCAATT TGCCGAGCATCGCCAGCGCAATGAACAGCACACCGAGGACCAGGCCGCGCAAACCAAGATCGATGGCGAACGCCAGTGCACGAACCATCAACCCGGCCGG ACGCAGTGGCAGGTCGACGCCCTCCGGCGTTTCGACCTGGTACCGCGTATCCAGCGGTGGTGACAGCGGCGCATTCCGTGGCTGTGCTGTGGTCTCGAGC ATGGGCACCTGATGATGTGGCCTGGATCGGGATTGTGTATCCATTCGATGCTAGCAGCCTATTCGAGGGGCGGGGGCGCAGGGAAACGACATAACTGTGT ATTGCATGGCGAGCCGTGCAAGATGCTTGAATGACAGACTACTGGCCGGGGCGTGAGGTGAACGCCTAGACTTTGCCGATCTTCAGTTCAGGAATCGCCC
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| DNA Sequence for Gene |
>PputUW4_04326
|sbcB
GTGACCTCCATCTTCTGGTACGACTACGAAACCACTGGCATCAATCCCCGTTGCGACCGTCCGTTGCAAATGGCCGGCCTGCGCACCGACTTCGATCTCA ATGAAATCGACGAGCCGGTCAATCTTTACTGCCAGCCCAGCGACGACATCCTGCCGCACCCGGCCGCTTGTGCGATCACGGGAATCACGCCCGGGCAACT GCAGGCACAGGGTTTGAGTGAAGCCGATTTCATGACCCGGGTGCATGCCCAGCTCGCGGCACCTGGCACCTGTGGTGCGGGGTACAACACGCTGCGTTTC GATGACGAGATGACCCGCTACAGCCTGTACCGAAACTTTTTCGACCCTTATGCGAGGGAATGGCAGGGCGGCAATAGCCGCTGGGACCTGATCGATGTGG TGCGCGCCGCTTATGCCTTGCGCCCCGATGGCCTGCAATGGCCGACGGACGACGAAGGGCGGGTCACGCTCAAGCTCGAGCGCCTGACTGCGGCCAACGG CATCGATCATGGCAATGCCCACGAGGCGCTGTCGGACGTTCGCGCGACAATTGCACTGGCGCGCCTCATTCGGGAAAAACAGCCAAAGCTCTACGCCTGG CTGTTTCAACTGCGCAGCAAGCAAAAAGTCATGGACCAGATACGCCTGCTGCAACCGCTGGTGCATGTTTCCGGACGCTTTTCGGCGGCGCGCAGCTATG TGGGGGTGGTGTTGCCGCTGGCCTGGCACCCACGCAACAAGAACGCCCTGATTGTCTGTGACCTGCACCTGGACCCCCAGGGCCTGCTCGACCTGGATGC CGAAAGTTTGCGTCAGCGCTTGTATACCCGCCACGACGAACTGGCTGAGGGGGAGTTGCCAGTGCCGTTGAAGCTGATACACATCAACAAGTGCCCGGTG GTGGCCCCGTTGTCGGTACTTCGCCAGGATGATCAGCAGCGCCTGGGTCTGGACATGGCGCTGTATCAACAGCGAGTGCTGCAGCTAAATGACACGCGGA AAGTTTGGCTGGATAAAGTCCTGGCGATTTATGCCCGCGAAGATTTTTCCCAGAGCCAGGACCCGGAGCAACAGTTATACGATGGATTCATCGGTGATCG GGACCGGCGTTTGTGCGAACAAGTCAGAACCGTTGACCCGATGCAGTTGGCACAAGAGCAGTGGCCTTTCGATGACGAACGCTTGCCTGAATTATTATTT CGATATCGCGCACGCAACTTTCCCGATACGTTGAATGCCGAGGAGCAAGAGCGCTGGCGAATATTCTGTCAGAAACGTTTGTCAGACCCCGGATGGGGGG CGCCAAATACCCTCGAAAGTTTTGTAGAGGCTGCGGCCCAATTGAGCGTTAGTGCTACTGCGTTTCAGCAGGGGGTGCTCGGTGAGTGGCAGGATTATGT CCTGGGATTGCGTCAGCGTTTGCATCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCGAACCTGCCGCTGCTTAAAGGCCGCGCATAAAAAACGCCAGCATTTGCTGGCGTTCTTTTTTTGTCACGGATCCATCTGCGACAGGCTCTGAGGCT TAGCCCAGCAGGGTAGCCCAGCCTTCTACCACGTCGCCGCCCCACTTGGCTTTCCACTCTTTCAGAGTCTTGTGGTTGCCACCTTTGGTTTCGATGACTT CGCCGTTGTGCGGGTTTTTGTATTGTTTAACTTTGCGAGCACGCTTGGTGCCGGTAGTTTTCACTGCACCACCGCGTGGTGCCTTGGTTTTCGACTCTGG ATCCAGCAGCGCGATGATGTCACGCAGGGACTTGGAGTATTCACCCATCAAGGTGCGCAGTTTGCCTTCGAATTCCAGCTCGGTTTGCAGTTTGTCGTCT TGGGACAGGTTCTTCAAACGGGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCGCGATATTCGTTGATCAAGGACATGGGAACTACCTTATGTTGTACGC
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITGITPGQLQAQGLSEADFMTRVHAQLAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLQWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVRATIALARLIREKQPKLYAW LFQLRSKQKVMDQIRLLQPLVHVSGRFSAARSYVGVVLPLAWHPRNKNALIVCDLHLDPQGLLDLDAESLRQRLYTRHDELAEGELPVPLKLIHINKCPV VAPLSVLRQDDQQRLGLDMALYQQRVLQLNDTRKVWLDKVLAIYAREDFSQSQDPEQQLYDGFIGDRDRRLCEQVRTVDPMQLAQEQWPFDDERLPELLF RYRARNFPDTLNAEEQERWRIFCQKRLSDPGWGAPNTLESFVEAAAQLSVSATAFQQGVLGEWQDYVLGLRQRLHL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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