Pseudomonas aeruginosa AZPAE15022, NT38_RS28130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE15022 AZPAE15022_contig_48, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCGACCGTGTTCACCGATTGCCGCGACGACATGACCATCGTCCGCGAGGAAATCTTCGGCCCGGTGATGAGCATCCTGGTCTATGACGACGAAGACGA GGCGATCCGCCGCGCCAACGATACCGAGTACGGCCTCGCCGCCGGCGTCGTGACCCAGGACCTGGCCCGCGCCCACCGCGCCATCCATCGCCTGGAAGCC GGCATCTGCTGGATCAATACCTGGGGCGAGTCGCCGGCGGAAATGCCGGTCGGCGGTTACAAGCAATCCGGTGTCGGTCGCGAGAACGGTCTCACCACCC TGGCTCATTACACTCGCATCAAGTCCGTGCAAGTGGAGCTGGGCGACTACGCCTCGGTGTTCTGAGCCTCGACGCAGCGCTCGAACCCCTAACCAGGCCG GTCCCAGGCAACGCTCCCTGACACCGGCCATTCCGAACTTCCAGACACCGGCGCGCCAGCGTCGCGGCCGGTGTCATGCCGAGAAAAGAGGAAGGTCTGC
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| DNA Sequence for Gene |
>NT38_RS28130
ATGTCCCAGGAATTCGACTACATCATCATCGGAGCCGGCTCTGCCGGTAACGTACTCGCTACCCGCCTCACCGAAGATGCCGACGTCAGCGTCCTGCTGC TCGAAGCCGGCGGTCCCGACTACCGCTTCGACTTCCGCACCCAGATGCCGGCGGCCCTTGCCTTCCCGCTGCAGGGGCGGCGCTACAACTGGGCCTACGA GACCGACCCCGAGCCCTACATGAACAACCGCCGCATGGAGTGCGGTCGCGGCAAGGGCCTGGGCGGCTCCTCGCTGATCAACGGCATGTGCTACATCCGC GGCAACGCCCTGGACTTCGACGGCTGGGCCAAGGAGCCGGGCCTCGAGGACTGGAGCTACCTCGACTGCCTGCCGTACTTCCGCAAGGCGGAAACCCGGG ACATCGGCCCCAACGACTACCATGGCGGCGACGGCCCGGTCAGCGTGACCACGCCGAAGGCCGGCAACAACCCACTGTTCCATGCGATGGTCGAGGCCGG CGTGCAGGCCGGCTACCCGCGAACCGATGACCTCAACGGCTACCAGCAGGAAGGCTTCGGCCCCATGGACCGGACCGTCACCCCGGAGGGCCGTCGCGCC GCCACCGGGCGCGGCTACCTGGACCAGGCCCGCGGCCGGCCCAACCTGACCATCGTCACCCACGCCCTGAGCGACCGCATCCTGTTCAGCGGCAAGCGCG CCATCGGCGTCTCCTACCTGGTGGGCAACGGCGACAACCCGGTCACCGCCCACGCCCGCCGCGAAGTATTGGTGTGCAGCGGCGCGATCGCCTCGCCGCA ATTGCTGCAACGCTCCGGCGTCGGCCCGGCGGCCCTGCTGCGCGACCTGGACATCCCGGTGGTGCATGACCTGCCGGGCGTCGGCGCCAACCTGCAGGAT CACCTGGAACTCTACCTGCAGTACGCCTGCAAGCAGCCGGTGTCGATCTACCCGGCGACCAAATGGTGGAACCAGCCTGCCATCGGTGCCCAGTGGCTGT TCCTCGGCAAGGGCCTCGGCGCCAGCAACCAGTTCGAGGCCGGCGGCTTCATCCGAACCCGCGAAGCGTTCGAATGGCCGAACATCCAGTTCCATTTCCT CCCGGTGGCGATCAACTACAACGGCAGCAAGGGCGTGCAGGAGCACGGCTTCCAGGCGCACATGGGCTCGATGCGCTCGCCGAGCCGCGGGCGCATCCAC CTGAAGTCCAGGGACCCGCGCCAGCATCCGAGCATCCTGTTCAACTACATGTCCCACGAGCAGGACTGGCAGGAGTTCCGCGACGGCATCCGGCTGACCC GCGAGATCATGAACCAGCCGGCGCTGGACCCCTATCGGGGCCGCGAGTTGAGCCCTGGGGTGAGCGTGCAGTCGGACGCCGAACTCGACGAGTTCATCCG CAACCATGCTGAGACCGCTTTCCACCCATCCTGCTCGTGCAAGATGGGCAGCGACGACATGGCGGTGGTCGATGGCCAGGGACGGGTCCATGGCATGGAA GGACTGCGAGTGGTGGATGCGTCGATCATGCCGCTGATCATCACCGGCAACCTCAATGCCACCACCATCATGATGGCCGAGAAGATCGCCGACAGGATCC GCGGTCGCCAGCCGCTGCCGCGCAGCACGGCGAAGTACTACGTGGCCGGGGATGCGCCGGTACGCGGCAACCCCGTGCGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACGCGCAAACAAGAACGCCGGCGATAGCCGGCGTTCCTGCGTCTAGCCCCGGCGTGGCGGGACCGGGCGGGTGCGCCCGCTGCCATCGATGGCGACG AACACGAACACCGCCTCGGTGACTTTGCGCCATTCGCTGGACAGCGGGTCGTCGCTCCACACCTCGACCAGCATGCGGATCGAGCTGCGGCCGACTTCCA GGGTCTGGGTATAGAAGGAAAGCTGGGCACCTACCGCGACCGGCACCATGAAGGCCATGCGGTCGATGGCGACGGTGGCGATACGGCCGCCGGCGATCTT GCTGGCCATGGCGGTTCCCGCCAGGTCCATCTGGGATACCAGCCAACCGCCGTAGATATCGCCGAAACCGTTGGTTTCGCGCGGCAGCGCGGTAATCTGC AAGGCCAGGTCTCCCTGGGGAATGGGGTCTTCTTGTTCAAGCTCGATCATAGGTAAGGGCCTCGTGCCCCCCGGATTTCTTGTTCAAGCGCGGTTTAGGG
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPYMNNRRMECGRGKGLGGSSLINGMCYIR GNALDFDGWAKEPGLEDWSYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPEGRRA ATGRGYLDQARGRPNLTIVTHALSDRILFSGKRAIGVSYLVGNGDNPVTAHARREVLVCSGAIASPQLLQRSGVGPAALLRDLDIPVVHDLPGVGANLQD HLELYLQYACKQPVSIYPATKWWNQPAIGAQWLFLGKGLGASNQFEAGGFIRTREAFEWPNIQFHFLPVAINYNGSKGVQEHGFQAHMGSMRSPSRGRIH LKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELSPGVSVQSDAELDEFIRNHAETAFHPSCSCKMGSDDMAVVDGQGRVHGME GLRVVDASIMPLIITGNLNATTIMMAEKIADRIRGRQPLPRSTAKYYVAGDAPVRGNPVRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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