Pseudomonas sp. UW4, PputUW4_01750 (vgrG2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuu03070 | Bacterial secretion system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR03361 | JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain | IPR017847 | Type VI secretion system, RhsGE-associated Vgr family subset | 17 | 441 | 6.8E-82 |
| Gene3D | G3DSA:3.55.50.10 | - | - | - | 93 | 187 | 6.7E-56 |
| Gene3D | G3DSA:2.40.50.230 | - | IPR037026 | Vgr protein, OB-fold domain superfamily | 343 | 442 | 5.9E-14 |
| SUPERFAMILY | SSF69255 | gp5 N-terminal domain-like | - | - | 352 | 440 | 2.2E-11 |
| NCBIfam | TIGR01646 | JCVI: type VI secretion system tip protein VgrG | IPR006533 | Type VI secretion system, RhsGE-associated Vgr protein | 20 | 438 | 3.5E-55 |
| Pfam | PF05954 | Phage tail baseplate hub (GPD) | - | - | 28 | 314 | 5.4E-51 |
| SUPERFAMILY | SSF69279 | Phage tail proteins | - | - | 17 | 183 | 4.68E-45 |
| Gene3D | G3DSA:4.10.220.110 | - | - | - | 217 | 273 | 6.7E-56 |
| Gene3D | G3DSA:2.30.110.50 | - | - | - | 21 | 317 | 6.7E-56 |
| PANTHER | PTHR32305 | - | - | - | 3 | 186 | 3.1E-16 |
| SUPERFAMILY | SSF69279 | Phage tail proteins | - | - | 254 | 351 | 8.84E-23 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.