Pseudomonas sp. UW4, PputUW4_01040 (wspA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006935 | chemotaxis |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0004888 | transmembrane signaling receptor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppuu02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppuu02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 211 | 263 | 6.0E-9 |
| Coils | Coil | Coil | - | - | 91 | 111 | - |
| CDD | cd06225 | HAMP | - | - | 214 | 258 | 1.6632E-5 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 211 | 540 | 2.4E-67 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 8 | 33 | 3.5E-18 |
| Pfam | PF12729 | Four helix bundle sensory module for signal transduction | IPR024478 | Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain | 3 | 180 | 3.5E-16 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 376 | 403 | 3.5E-18 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 271 | 539 | 5.8E-43 |
| PANTHER | PTHR32089 | METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB | - | - | 19 | 539 | 3.1E-78 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 231 | 540 | 7.85E-60 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 208 | 258 | 4.9E-9 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 299 | 328 | 3.5E-18 |
| PRINTS | PR00260 | Bacterial chemotaxis sensory transducer signature | IPR004090 | Chemotaxis methyl-accepting receptor | 405 | 434 | 3.5E-18 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 324 | 503 | 2.9E-34 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.