Pseudomonas sp. UW4, PputUW4_00345 (pilN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. UW4 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGAGGAACCGTTGACGGTCGCAGTGGTGGATATCGGCGCCACCATGACCACCCTGAGCGTGCTGCACAACGGGCGGATTATCTACACCCGTGAGCAAC TGTTCGGCGGTCGGCAGTTGACCGGGGAAATCCAGCGTCGCTATGGCCTGACGCTGGAACAGGCGAGTCTGGCGCAAAGGAAGGGCGGCCTGCCGGAAGA CTATGCCGGTGAGGTCCTGCAGCCATTTCAACAGGCGCTGGTGCAACAGGTGTCGCGCTCGTTGCAGTTCTTCTTTGCTGCAGGCCAATACAGCGCCGTC GACCATATCCTGCTGGCCGGCGGTACCGCGTCGGTCCCGGGGCTGCCCCTTTTGATCGAGCAGCAATTGGGCACGCCGACCCTGATCGCGAACCCTTTTT CCGAAATGATGCTGGGCAGCAAGGTCAATGGTGCCGCCCTGGCGAGTGATGCCCCGGCGTTGATGATCGCCTGTGGTCTTGCCCTCAGGAGCTTCGACTG
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| DNA Sequence for Gene |
>PputUW4_00345
|pilN
ATGGCGCGGATCAACCTTTTACCCTGGCGCGAGGAGCGGCGTGAAGTTCGCCGCAAACGCTTCCTGCTGGTCCTGGTGGCCGCTATGGCGGGTACGATGG GTGCGGTGCTGGTTGCCAACCAGGCCATCAGCCGTGCCATCGACCGGCAAATCGCCCGTAACGATTACATCGGCAGGCAAATCGCCGTGGTCGATGAGCG GATCACGCAGATCAATGATCTCAAGGAGCGCCGCCAGCAACTGGTCGAACGCATGCACATCATCCAGGACCTGCAAGACAATCGCCAAACCAGTGGGCGA ATGTTTGACCAGTTGGCGCGGGCACTGCCTGACGGCGTGTATTTCACCGAAGTGAGAATGACCGGAAAGACCTTGTCCATCACCGGTGCCGCGCAATCCA ACAACCGTGTTTCAGACTTGATGCGCAACCTCGAGGCATCAGACTGGTTCGATGCGCCGAGCCTGACCGAAGTCAAGGTCGCAGCTGCCGGTCAGGTGGA GCAGGCCAACGTCTTCCAGTTGACCGTTCGCCAGACTCAACCGGCAGCACCGGAGGGAGGCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCTGTCCGAATGGTTCGAAGGGCTGCGCAAGATCGACATCAATGAGCTGGACACCAGCAACATGGGGGCCTGGCCGCCGGCGATCAAGTGTCTGGTGGC CGGTTTGCTCATGCTTGTGGTGCTGGCCTTGGGCTACAACTTTTCCACTCGCGACCTCGAGAGCCAGCTCGATCTGAAGCGCGAGGAAGAGTCGACGCTC AAGGAGCAGTTCGCCGGTAAAGCGCGCATGGCGGCGAATCTCGATCTCTACACCCGGCAGTTGAAGGAGATGGAGAGCGCTTTCAGCGTGCTGTTGCGGC AACTGCCCGGCGACACCGAAGTGCCCGGCTTGCTGGAAGACATCACGCGTACAGGTTTGGGCAGCGGCCTGGAGTTCGAAGAGATCAAGCTGCTGCCCGA GGTCGCCCAGCCGTTCTACATCGAGTTGCCGATCCAGATCACGGTCACCGGGGGGTACCACGACCTGGCCACCTTCGTCAGTGGCGTGGCCGGGTTGCCG
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| Amino Acid Sequence |
>type 4 fimbrial biogenesis protein PilN
MARINLLPWREERREVRRKRFLLVLVAAMAGTMGAVLVANQAISRAIDRQIARNDYIGRQIAVVDERITQINDLKERRQQLVERMHIIQDLQDNRQTSGR MFDQLARALPDGVYFTEVRMTGKTLSITGAAQSNNRVSDLMRNLEASDWFDAPSLTEVKVAAAGQVEQANVFQLTVRQTQPAAPEGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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