Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5127
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pba02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF13416 | Bacterial extracellular solute-binding protein | IPR006059 | Bacterial extracellular solute-binding protein | 55 | 302 | 1.2E-42 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 28 | 325 | 4.8E-113 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 129 | 332 | 4.8E-113 |
| CDD | cd13589 | PBP2_polyamine_RpCGA009 | - | - | 26 | 295 | 3.30466E-81 |
| PANTHER | PTHR30222 | SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN | - | - | 8 | 344 | 1.5E-41 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 25 | 344 | 1.71E-60 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.