Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGGTCGCACCACGGACTTCTTGCTGGTGCCCTATTTCGGCGCCTGCATCCACGTACCGCCACCGCCGTCCAACCAGATCGTGCATGTGAAAAGTGAAG TCGGGGTCAAGCTCGACGAGTTGTACCAGCCGTACTGGGTCGAAGGGCCGATGCAGGTCAAGCCGTCCACCAGTGAACTGGCCGATGCCGGGTATCAGAT GGAGGCCGAGAAAATTTATGTGTATGAGCTGCCGGAGTGAGTCCGGTAGTGATGTGTTGTTGATGAGATAGCTATCGCGAGCAAGCTCGCTCCCACAGTT GATCGCGTTTCTTCAGAAAGAATACGGTCGAATAATGTGGGAGCGAGCTTGCTCGCGATGGTTCCCTCAAATTTTCCCATCAGCGCTTTTATTGAGCTGA GTCAATTAAACACCCCCTGACTCATTGAGCTGTGTCAAAAGACCGGAGCAGACGGCTTCGTACCATGGGACATCAAATTTCGATGCCCTCTGGAGCCCTC
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| DNA Sequence for Gene |
>PSEBR_a5050
ATGAACAAGTCCTTGCTCTGCGCTTCCCTCGCGGCCCTCGCGCTCGCTGCCCCACTCGCCCAGGCCCACACCGCTGGCGATATTATCGTTCGCGCCGGTG CCATCACCGTCAACCCGGAAGCCGACAGCTCCAGCGTCAAGGTCGACCGTGGCCCGCTGGCCGGCGCCGACCTGGGTGGCAAGGCGACCATGAGCAGCGA CACGCAGTTGGGCTTGAACTTCGCCTACATGATCACCAACAACCTGGGCATCGAACTGCTGGCGGCCTCGCCGTTCGAGCACGACGTGAAAATCAAAGGC ACCGCCCTGGGCGCGGCCAATGGCAAGCTCGGCACCCTCAAGCACCTGCCGCCGACCTTGAGCCTGGTCTACTACCCGCTCGACGCCAAGTCGGCGTTCC AGCCTTATGTCGGCGCCGGCATCAACTACACCTGGATCTACGACGAACACGTCGGCAGCGAAGCCAGCGCCAACGGCTTCAGCAATTTCCGTGCGAGCAA CAGCTGGGGCATGGCGTGGCAAGTGGGCGCGGACTACATGTTGACCGACAACATCATGATCAACGGCCAGATTCGCTACATCGACATCGACACCACCGCG TATGTGGACAACAACGCCGTGGCCGGCGGTACCCGGGCCAAGGTGAATGTCGATGTGGACCCATGGATCTACATGGTGGGGTTGGGCTACAAGTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGAACCTGAAGGTACGAAAATCCCTGTGGGAGCGAGCTTGCTCGCGATGACGGTGGATCAGCCAGCAATCACGTTGACTGACCCGCCGCTATCGCGAG CAAGCTCGCTCCCACAGTTTTTGGGCGGTGAGAATCTCAGCGTCCCAGCAACCGCGCCAGCCCCACGCTCATCGGGGTTTGCGGGGGAAAGCTGAAGCGC TGCAACAGCCGATGATTGTCGGCCCGCGAATGGCGGATGTCGCCGGAGCGTGCCGGGCCGTAGCTGATCGGCGGCAGATCGCCCACCACGGCGGCCAGGG CCTGGAGCATCTGCTTGAGGGTCGTGGCCTGGTTCCAGCCGACGTTCACCGCGCCCACTTCCACCTCGGGCTTTTCGATGGCCTGCACCAGCAAATCCAC CAAATCTTCGACGTAGACAAAATCCCGAGTCTGCTCGCCATCACCGAACACCGTGATCGGCAGGCCTTTCTGCGCCCGTTCGCTGAAGATACTGATGACC
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| Amino Acid Sequence |
>outer membrane protein W
MNKSLLCASLAALALAAPLAQAHTAGDIIVRAGAITVNPEADSSSVKVDRGPLAGADLGGKATMSSDTQLGLNFAYMITNNLGIELLAASPFEHDVKIKG TALGAANGKLGTLKHLPPTLSLVYYPLDAKSAFQPYVGAGINYTWIYDEHVGSEASANGFSNFRASNSWGMAWQVGADYMLTDNIMINGQIRYIDIDTTA YVDNNAVAGGTRAKVNVDVDPWIYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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