Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a3180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0019354 | siroheme biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01469
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008168 | methyltransferase activity |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.1010.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pba01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pba00860 | Porphyrin and chlorophyll metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pba01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | factor 430 biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | siroheme biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53790 | Tetrapyrrole methylase | IPR035996 | Tetrapyrrole methylase superfamily | 15 | 256 | 8.77E-78 |
| FunFam | G3DSA:3.30.950.10:FF:000001 | Siroheme synthase | - | - | 134 | 265 | 8.8E-43 |
| Pfam | PF00590 | Tetrapyrrole (Corrin/Porphyrin) Methylases | IPR000878 | Tetrapyrrole methylase | 20 | 230 | 2.3E-47 |
| FunFam | G3DSA:3.40.1010.10:FF:000001 | Siroheme synthase | - | - | 13 | 133 | 2.0E-47 |
| PANTHER | PTHR45790 | SIROHEME SYNTHASE-RELATED | - | - | 16 | 256 | 1.6E-92 |
| CDD | cd11642 | SUMT | IPR006366 | Uroporphyrin-III C-methyltransferase | 23 | 251 | 1.33964E-122 |
| Gene3D | G3DSA:3.40.1010.10 | - | IPR014777 | Tetrapyrrole methylase, subdomain 1 | 9 | 133 | 3.6E-39 |
| Gene3D | G3DSA:3.30.950.10 | - | IPR014776 | Tetrapyrrole methylase, subdomain 2 | 134 | 266 | 6.6E-44 |
| NCBIfam | TIGR01469 | JCVI: uroporphyrinogen-III C-methyltransferase | IPR006366 | Uroporphyrin-III C-methyltransferase | 18 | 253 | 2.7E-88 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.