Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2949
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CATCACCATCACTCGTGGCGAGGTCTGCCTGCACTTGGGCGAGGGCGATTGCCGGGTGGCGGTGGTCAGCGGCTCGGCACAACTGCAACCCCTGCGCGGG CCATTGCTGAGCTTGGAAGCGGGCCAGCAGGTCAACATCCAGGATTCAGGCGCGGGGCCAGTGAAGGCGTTCGACGTGGCGCAGCTGGGTTGGCGTGACG GCGTATTGGTTGCGCAGGACCAGCCGCTGGGGCATTTCCTGCGGGAACTGAGCCGCTATCGCCCCGGGGTGTTGCGTTGGGACGAAACCCTGGAAGCCCT GCGAATCACTGGCAGCTTCCGCTTGGACAACACCGACCGAATCCTCACGCTGCTTGCGGCCAGCCTACCGCTGGACGTGCACATGCGCACTCGCTACTGG GTCACGTTGACGCTTCGCAAAAATATGGCCTGATGCCTGTCCCCTTTTTTTGTCTCGCTTGTCATTCAAGGCAACTGAACAAAAATGAGAGCGCTTTCCA
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| DNA Sequence for Gene |
>PSEBR_a2949
ATGTCCGCAGTTGCACCTTTGCGTTTGCGCCCGGCCTTTGCCGGCTGGCGTCCGCTGTTGAACCTGAGCCTCATGCTGAGCTTGAGCGCCAGCCCATTCT TTATCTCATCGAGCCTGGCCGAAGAAACCGACCGGCGCAGCTATCAGGTGCCGGCCGGCAGCCTCGGCGCAGCGTTGGCCCGGTTTGCCGGGCTGGCGGG CGTCAACCTGTCGGTGGATCCGGCCCTGGTAAGTGGTCGCAACAGCGCCGGGCTTTCGGGTGAGTTTGGCGTAGAGGAGGGGTTTGCCCGGCTGTTGTCG GGTTCGGGCCTGCAATTGCAAGCGGTGGGTGAGCAGGCCTATATCCTGACGCCGGCACCGGAAGGCGGCAGCCTGCAACTGGCACCCACCTCGATTCTAG GCGCCACGACGTCGACGGACAGCCCGGCGTATGCCGGTGGCCAGGTTGCTCGCCGTGGTTCGCAAGGCTTGCTGGGCTCGCGGGATTTCATGGAAACACC GTTCAGCATGACCACCTACACCAGCGCGGCGGTCAAGAACCAGCAGGCGCGCACCTTGGGCGACATGATCGCCAGCGACCCCTCGGTCCGCGCCACCAAC CCGGCGGGCGGACGCTTTGAGCAGTTCACCATTCGTGGTTTCAGCCTGTTCAACAGCGATGTTGCGTACAACGGTCTCTACGGCATCCTGCCGACCTACA CCATCGACATGGAAATGGCCGAACGCGTCGATATCCTCAAGGGCCCGAGCCAGCTCATCAACGGTATCTCGCCGCGGGGCAGCGTGGGCGGCGGGATCAA TGTGGTGCCCAAGCGTGCCACCGACAAGCCCATCACCTCGTTCACCGGCAGCTATGCCTCCAACAACCAACTGGGCGGTGCTGTGGATGTCGGTCGGCGC TTTGGCGAAGATGACAAGTTCGGGATTCGCTTCAATGGCGTGAAGCAGGCGGGCGACACCGAATGGGATCAACAGAGCGTGGACCGCGAGATGGCGGTGC TGGGCCTGGATTTTCGCGGTGAGCGCCTGCGACTCTCGACGGACATCGGCCACACCGAACGTAACACCGACGCGCCCCAGGAACGCGTGCAGGTGGGCGC CAATGCACAGGTTCCTCACGCCAGTGATGTGCGCGACAACTACGCCCAGTCCTGGAGCAAGGCGCGCACCAAGGACACCTTCGGCACCGTGAACGCTGAA TTCGACGTCAACGATTCCGTCATGCTGTATGGCGGTGTCGGAGCGCGTAAAAGCGAGCACGACTTCCTTCGGCACAACGTTTCGGTCACCAACGACGCGG GTGACTTCACCGTCCAGCCCCGAGACTTTACCCGCGACGAAAATGTCCGCACGGCCACAGCCGGGGTGCGCAACTGGTTCCATACCGGCCCGGTGAGCCA TGAGGTCAACCTGGCTGCCAGCTATTTCTACATGGACTTCGAAAATGGCGGCGCCCGTTACGCCAACGGTCGCAGCAACCTGTATGAACCGGTGCAGACC CCGGCGCCGAGCAACCCGACGCGACAGGACGATAAGGTCTACACCGAGAACCGCTTCAGTGGCGTGGCGTTGTCCGACACCCTGGGGCTGTTCGACGATC GCTTGCTGCTGACCCTCGGCGCTCGCTGGCAACGGGTGAAGGTTGACGACTGGACGAATAACGTCAAGGGCGACACTGCCTACGATGAGGAAAAGGTTTC ACCGTCGGGCGGCATCCTGTTCAAGGCGACGGACAAGTTGTCGCTGTATGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCGACGTCG GTGAACGAGGATGAGATTTTCCCGCCGTTCATCAGCCGTCAGGTCGAGGTGGGCGCCAAGTATGATGCCGGCCCATTCGCCGTCACCGCCGCGCTGTTCC GGATCAAGCAGCCGGCCTATGCGACCGACGCCACGACGCGTGTCTTCGGCCCGAACGGCAAGCGAGAAAACACCGGCGTGGAGTTGAGTGTGTTTGGCGA ACCGCTGAAGGGAACCCGTTTGCTCGGCGGCGTGATGTACATCGACAGCGAACTGACCCATACCACCAATGGCACCTTCGATGGCAACCGCGCCCCCGCC ACGCCGAAGTACAACGTCAACCTCGGTGCCGAATGGGACGTGCCGACGGTACAGGGCCTGACCCTGACCAGCCGGGGCATCTACTCCAGCTCGCAGTACC TGGACCAGTCCAACACCAAGGAAATCGATTCCTGGGAACGCTTCGACGTCGGCGCCCGCTACGCATTCAAGGTCGACGAGAAGAACGTCACCCTGCGGGC CAACATCGAAAACGTGGCAGACAAGCGCTACTGGAGTTCGGCCGGGGCGTCGGATGACAGTGAGGCCGGATTGACGTTGTCGACCCCGCGCACCTACCTG ATTTCCGCAACGGTGGATTTCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCAGGTGCCGCTCCAGGGAAGGAGCCGCCTGGGTTCAGATGTCGCGAAACAGATCGTGAGCATCCAGCAGTCGCCAGGCAATTTCGGGGCGTTTTTCC AGCCCACGGCGGATGGCGGCGGGAATCGACTGGCGAATCTTGCGGCACAGGCCGGGCTGGTCCTGGAATTCGATGGCGATGCCGCGCATGGTCCGCACTT CGTTATAGCCAGGCTCGACGCTCAGGCGGATCCCCAGGTTTTCGTACAGGCGTTGCTGCAGGCGCTGGAGTTCGTCGAGGCTCTGGATGTTCTCCAGGCG TTCAAGCAGGCGTTTTTCTTCCTGGCGATTCAAGCAAAGGATGCGCAGGTCGCTGCCAGGCGCTTGCAGCAAGGCATCACGGCTGCAATCGCAGACGCCG GGCGGGCAGGGGGGACGGATCGGAATCGACGCGGTCATGGGCTCCACAAAAATCTGCTGCACAACGAAACAGCGAGCTTATCGCCGGCCCAGGCAATGTG
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| Amino Acid Sequence |
>ferric siderophore receptor
MSAVAPLRLRPAFAGWRPLLNLSLMLSLSASPFFISSSLAEETDRRSYQVPAGSLGAALARFAGLAGVNLSVDPALVSGRNSAGLSGEFGVEEGFARLLS GSGLQLQAVGEQAYILTPAPEGGSLQLAPTSILGATTSTDSPAYAGGQVARRGSQGLLGSRDFMETPFSMTTYTSAAVKNQQARTLGDMIASDPSVRATN PAGGRFEQFTIRGFSLFNSDVAYNGLYGILPTYTIDMEMAERVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITSFTGSYASNNQLGGAVDVGRR FGEDDKFGIRFNGVKQAGDTEWDQQSVDREMAVLGLDFRGERLRLSTDIGHTERNTDAPQERVQVGANAQVPHASDVRDNYAQSWSKARTKDTFGTVNAE FDVNDSVMLYGGVGARKSEHDFLRHNVSVTNDAGDFTVQPRDFTRDENVRTATAGVRNWFHTGPVSHEVNLAASYFYMDFENGGARYANGRSNLYEPVQT PAPSNPTRQDDKVYTENRFSGVALSDTLGLFDDRLLLTLGARWQRVKVDDWTNNVKGDTAYDEEKVSPSGGILFKATDKLSLYANYMEGLSQGKIAPSTS VNEDEIFPPFISRQVEVGAKYDAGPFAVTAALFRIKQPAYATDATTRVFGPNGKRENTGVELSVFGEPLKGTRLLGGVMYIDSELTHTTNGTFDGNRAPA TPKYNVNLGAEWDVPTVQGLTLTSRGIYSSSQYLDQSNTKEIDSWERFDVGARYAFKVDEKNVTLRANIENVADKRYWSSAGASDDSEAGLTLSTPRTYL ISATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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