Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a2922
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCATCGGCCGCAAGAAGAACTTCATCCTGTTCGCCGTCGGCTCAATGGCAATCGTCCTGGCCTACACCCAGTTGCCCATCGATAACACCTGGATGCTCT GGCTGGGCTTTCCACTGGGCTTCTTCGCCTCGGGCATCTTCGCCGGCATGGGCGCATTCCTGACCGAGCTGTTTCCCACCCGCATGCGCGGGTCGGGGCA GGGATTCTGCTACAACGCCGGGCGTTCCATCGCGGCGCTGTTCCCTTTGTTCATCGGCGCGTTGAGCAACACCTTGCCCATCGGCACCGGGATCGGCGTA TTCGCCGCTGGCGCCTATGGCGTGGTGATCCTGGCGGCGTTGAGCCTGCCGGAAACCCGCGGCAGACAACTCGAGTCCTGACTACCTGTGACGTCCGTGC ACAGCGCGGACGCCGCTACACCCCTTAAAACAACAACCATCGGACGCGATTGCAACGCCACCGAGAGGGTTCGCTCGCGTCCATAAAAAAGGAGCATGAC
|
|
| DNA Sequence for Gene |
>PSEBR_a2922
ATGGGGCATTTCACATCCACCTGGTTTTATACCCCCGCCGGTACGTTGCTGGGCCTGAGCCTGATCGGCGTGCCGAACGCCCAGGCCGACTTCATCGCCG ACAGCAAAGGCAGCCTGGAGGCCCGCAACTTCTACTTCAACCGTGACTTTCGCCAGGAAGGGGCACGGGACAAGGCCGAAGAATGGGCGCAGGGCTTTCT GCTGCGGATGGAGTCGGGATACACCGCCGGGACCGTGGGTTTCGGCCTCGATGCCTTGGGCATGGCCGGTTTCAAACTGGACTCCGGGGGCGGTACGGCG GGCACCAACCTGCTGCCAGCGGATTTGTCTGGTGGTTCGCAAGACCGCTATGGCGAACTGGGCCTGACCGCCAAAGTCCGTGTGTCCAACAGCACCTTGA AGCTGGGAACCCTGCAAATCAAGGACCCTGCGGTGAGTTCCAACGACACGCGCCTGTTGCCAGGAACCTTCAAGGGCGGCTTGCTGAGCGTGCAGGAAAT CGATCGCTTGAAGCTGACCGCCGGGCAACTCACGCAGATCAATTTTGTCGACTCCACCGACTACCAGGACATGACCGCCAACCGCATCGGCGGCAGCAGC GACAAGTTCCAGTTCGCCGGAGCGGACTATCAGTTCCTGCCGAACCTCAGCGCGCAATACCGCTATAGCCTGTTGGAAGACATCTACCAGCAGAACTACC TCGGCTTCGTCCACACCCTGGACCTGGGCGCAGGCCAGTCGTTCAAGAGTGACGTGCGCTATTCGCGCAGCACCGAAGACGGCAGTTTTCGCGAACTCGA CAACCAGGCCTTCGGCGCCATGTTCACCTACAGCCTGGCGGGCCATGCGTTGGGCCTGGGCTACCAGCGCATGAGCGGCGACGATCCGTTCCCGTACATC GGACGCAGCGATCCCTACCTGGTCAACTTCGTGCAGATCGGCGACTTCGCCAACATCGACGAGCGTTCCTGGCAAGCGCGCTATGACTACAATTTTGCGG CCATTGGCGTACCTGGGTTGACCTTCATGACCCGCTACATCACCGGCGACAACGTCCAGCGCAGCGCTCCGGGCGAAGGCAAGGAATGGGAGCGCAACAC GGATATCGCCTATGTGGTACAGGACGGAACGTTGAAGGGCGTGGGCTTGAAATGGCGCAACGCGACGGTGCGCTCGAATTTTGGCAATGACCTGGATGAG AACCGGTTGATTGTCAGCTACACGATGGCGCTTTGGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCCCCGGCAATTTCTGGCCAGAGATTGCTCTCGCAGGACTCTGTAGAAGCTGGCGAAGCCTGCGATCTTTTGATCTTTCGCTTGAGACTCAAGTGTCTG GGAAAAGATCGCAGCCTCGTTGCACTCGACAGCTCCTACACGGTTCCTACATTATCAAACTCGATGAATGGCGTCGTTACGTGTATACAGGTGCGCTTCG AAAGGGATTTTCAAGACAACACAAGGGAGCTGTCGCTGTGATTTACCTGATACGCCATGCCACGCCGCTGATCGATTACAAACCCTGCAATGCTCATTCG GCCAAGCTGCTGCTGGATGAATACAATCAGACCTCGTCCATCGATGAGGGTGAGATTGTCGCATTCCTGAGCCAACCGGACTTGTCCCAAGTGCTTTTGG CGACCGAAGCCAACATCATTTCCTCGCCCGTCAACAGAGCCTACGCGACGGCATGCCGGCTATTCGAAGCCACACGTATCCAACAGGATGCTCGACTACG
|
|
| Amino Acid Sequence |
>outer membrane porin
MGHFTSTWFYTPAGTLLGLSLIGVPNAQADFIADSKGSLEARNFYFNRDFRQEGARDKAEEWAQGFLLRMESGYTAGTVGFGLDALGMAGFKLDSGGGTA GTNLLPADLSGGSQDRYGELGLTAKVRVSNSTLKLGTLQIKDPAVSSNDTRLLPGTFKGGLLSVQEIDRLKLTAGQLTQINFVDSTDYQDMTANRIGGSS DKFQFAGADYQFLPNLSAQYRYSLLEDIYQQNYLGFVHTLDLGAGQSFKSDVRYSRSTEDGSFRELDNQAFGAMFTYSLAGHALGLGYQRMSGDDPFPYI GRSDPYLVNFVQIGDFANIDERSWQARYDYNFAAIGVPGLTFMTRYITGDNVQRSAPGEGKEWERNTDIAYVVQDGTLKGVGLKWRNATVRSNFGNDLDE NRLIVSYTMALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|