Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a1724

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pba02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.760.10:FF:000015 Cbb3-type cytochrome c oxidase subunit - - 226 322 1.7E-47
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 230 319 2.01E-21
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 145 219 8.8E-12
PANTHER PTHR33751 CBB3-TYPE CYTOCHROME C OXIDASE SUBUNIT FIXP - - 39 316 3.0E-59
Gene3D G3DSA:6.10.280.130 - IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily 1 92 5.2E-37
NCBIfam TIGR00782 JCVI: cytochrome-c oxidase, cbb3-type subunit III IPR004678 Cytochrome c oxidase cbb3-type, subunit III 34 319 6.5E-74
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 55 222 2.07E-31
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 225 327 8.3E-26
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 234 312 3.3E-11
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 110 224 3.9E-31
FunFam G3DSA:1.10.760.10:FF:000013 Cbb3-type cytochrome c oxidase subunit - - 109 225 8.5E-52
Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal 37 83 1.2E-23
PIRSF PIRSF000006 Cbb3-Cox_fixP IPR004678 Cytochrome c oxidase cbb3-type, subunit III 1 319 1.0E-102

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.