Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a45
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 540 | 696 | 1.9E-46 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 215 | 237 | - |
| Coils | Coil | Coil | - | - | 512 | 539 | - |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 399 | 698 | 3.7E-73 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 541 | 697 | 3.9479E-65 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 308 | 331 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 538 | 698 | 8.7E-50 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 529 | 700 | 1.9E-62 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 534 | 699 | 2.9E-52 |
| Coils | Coil | Coil | - | - | 424 | 444 | - |
| Coils | Coil | Coil | - | - | 466 | 486 | - |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 526 | 699 | 8.4E-59 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 214 | 239 | - |
| Coils | Coil | Coil | - | - | 5 | 25 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 156 | 194 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 545 | 698 | 2.82E-50 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.