Pseudomonas fulva 12-X, Psefu_4346
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva 12-X chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGGCGCTCGCGATGCGGTGTTCAACGTTTTCGAAGCGCTGCTGGTCGAGCCCGGCCAGGCGGTGCAGGTCAGCCTGCTCGACAATCCCAAGGTGACTG CCCGCGGCGTGGTGCGTGAGGTCAACCCGCAGGTGTCGGCGCAGAGCGGCACGGTGCAGGTCAAGGTCGGCCTCGAAGAAGTGCCGGCGGCGATGACCCT GGGCTCGGCGGTCAGCGCCCATGTCAGCAACCCGGTGGTGCGCAGCGTCGAACTGCCCTGGTCGGCGTTGACCAAGGCGGAGAGCGAGCCGGCGGTGTGG CGCCTCGGTGAGGACGACATCGTGCAGCTGCACCCGGTGCAGGTCGGCCGCTACCTGACCGACAAGGTGATCATCCGCGCCGGCCTGAACGACGGCGACC GCGTGGTGGTGGCCGGTGGGCAACTGCTGCATCCGGGCCAGAAAGTGGAAATCGCCGAGGCCCGTGAACAGAACCAGCAGCAACAGCAGGAGCAGCAGCC
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| DNA Sequence for Gene |
>Psefu_4346
ATGAAGCGCGCCATCCCTTTCGCGCTGCTCGCCGCCCTGCTCGCCGGCTGCGCGGAAGAAGAAAAACCCGCACCTATCCGTCCGGTGCTTTACACCGAGG TGCAGCAGCAGGATCAGCAGGTGCTGGGCCGCTTCGCCGGCACCATCGAGGCGCGGGTGCAGAGCACCCTGGGCTTTCGCGTCGGCGGCCGGGTGTCCCA TCGCCTGGTGGACGCCGGCGCCGAAGTGACGGCCGGCACGCCGCTGGCCACCCTCGACCCCACCGACCAGCAGAACGCCCTGCGCGCCAGCGAAGGCGAC CAGGCGCGCGCCGAAGCGCAGTGGATCAACGCCCAGGCCAATGCGCGCCGCCAGCAGGAACTGTTCGACCGCGGCGTTGGCGCCAAGGCCAACCTGGAGC AAGCGCAGACCGAGCTGAGCAACGCCCGCAGCAACCGTGATCAGGCCGAGGCCGCCACCCGCCAGGCCCGCGACCGTCTGAACTACGGCACACTGAAAAG CGACTTCGATGCGGTGGTCACCGCCTGGCACGTGGAGGCCGGCCAGGTGGTCGGCGCCGGCCAGGAAGTGGTCACCCTGGCCCGCCCGGACGTGCGCGAA GCGGTCTTCGATCTGCCCGTGGAGCTGGCCGACGGCCTGGACGATCAGGTGCAGTTCAACGTCGCCTCCCAGCTCGACCCGACCATCGCCACCCGCGGCA GGCTGCGCGAACTGGAGCCGCGCGCCGATGCCGCCACCCGCACCCGCCGCGCTCGCCTGACCCTGGAAGAAACCCCGCCCGGCCTGCGCCTGGGCACCGC CGTGGCCATCAGCCTGACCCGCGCCCAGCAGCCGCGCAGCCTGTTGCCGGCCGCTGCCGTACAGGAAGTCGACGGCCAGAGCCGCGTGTGGCTGATCGAT ACCCAGGCCAAGACCGTGCACCCGCGCAGCGTGAAGGTGGTCGGCCGCGAAGGCGAACAGATCAGCGTCGAAGGCCTTGCGGCCGGCGACAAGGTAGTCA GCGCCGGCCTGAGCGAACTCATGGACGGCCAGCAGATCCGCATCGATGAGGGCGTCGCACCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCAGCAGGCGCCGCGCAAGGACGGCTTCAACCTCTCGGACTGGGCGCTGCGCCACCAGTCGTTCGTCTGGTACCTGATGTTCGTGTCGCTGCTGATGGG CGTGATTTCCTACATGAACCTGGGCCGTGAGGAAGACCCGGCGTTCACCATCAAGACCATGGTCATCCAGACCCGCTGGCCGGGCGCCACGGTCGACGAA ACCCTCAACCAGGTCACCGACCGCATCGAGAAGAAGCTCGAGGAGCTGGATTCGCTCGACTACGTGAAGAGCTACACGCGGCCGGGCGAGTCGACCGTCA TGGTGTTCCTGCGCGACACCACCAGCGCCGGCAACATCGATAACATCTGGTACCAAGTTCGCAAGAAGATCGACGACATTCGCGGCGAATTCCCCCAGGG CCTGCAGGGTCCGTCGTTCAACGACGAATTTGGCGACGTGTTCGGCTCCATCTACGCCTTCACCGGCGACGGCCTGAGCATGCGCCAGCTGCGCGATTAC
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| Amino Acid Sequence |
>RND family efflux transporter MFP subunit
MKRAIPFALLAALLAGCAEEEKPAPIRPVLYTEVQQQDQQVLGRFAGTIEARVQSTLGFRVGGRVSHRLVDAGAEVTAGTPLATLDPTDQQNALRASEGD QARAEAQWINAQANARRQQELFDRGVGAKANLEQAQTELSNARSNRDQAEAATRQARDRLNYGTLKSDFDAVVTAWHVEAGQVVGAGQEVVTLARPDVRE AVFDLPVELADGLDDQVQFNVASQLDPTIATRGRLRELEPRADAATRTRRARLTLEETPPGLRLGTAVAISLTRAQQPRSLLPAAAVQEVDGQSRVWLID TQAKTVHPRSVKVVGREGEQISVEGLAAGDKVVSAGLSELMDGQQIRIDEGVAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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