Pseudomonas aeruginosa AZPAE14917, NS33_RS03940 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE14917 AZPAE14917_contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGCGATATCAGCGACAACCTCGATGTCCTGGTCGTCGACACTGCCGCCGGAATCGGCGATTCGGTGGTCAGTTTCGTCCGCGCCGCGCAGGAGGTGC TGCTGGTCGTCTGCGACGAGCCGACCTCGATCACCGATGCCTACGCCCTGATCAAGCTGCTCAACCGCGACCACGGCATGACCCGCTTCCGGGTCCTGGC CAACATGGCCCACAGCCCGCAGGAAGGACGCAACCTGTTCGCCAAACTGACCAAGGTCACTGACCGTTTCCTCGACGTCGCACTACAGTATGTAGGTGTC ATCCCTTACGACGAGTCGGTACGCAAGGCCGTGCAGAAACAGCGAGCCGTATACGAGGCATTCCCCCGCTCGAAGGCGTCCCTGGCCTTCAAGGCGGTCG CGCAGAAGGTCGACAGCTGGCCGTTGCCGGCCAACCCGCGCGGGCACCTGGAGTTCTTCGTCGAACGACTGGTCCAACACCCCGCGACAGGTTCGGCCGT
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| DNA Sequence for Gene |
>NS33_RS03940
|fliA
ATGACAGCGGCCTCTGGAGTGCGTATGTATAGCAAGGCGCAAGCGCAGAACTCCCAGGAGCAACTGATCCAGCGTTACGCACCACTGGTCAAGCGCATCG CCTATCACCTGCTCGGCCGCCTGCCGGCCAGCGTGCAGGTGGAGGACCTGATGCAGGCCGGCATGATCGGCCTGCTCGAGGCCGCGAAGAAATACGACGC CGGCAAGGGCGCCAGCTTCGAGACCTATGCCGGCATCCGCATCCGCGGGGCCATGCTCGACGAGGTCCGCAAGGGCGACTGGGCGCCGCGTTCGGTGCAC CGCAACACGCGCATGGTGACCGACGCGATCCGCGCGATCGAGGCGAGAACCGGACGCGACGCTAAAGATCACGAAGTTGCTGCCGAACTCCAATTGAGCC TCGAAGATTACTACGGCATCCTCAGCGACACGCAGGGCAGCCGCCTGTACAGCTTCGACGACCTGTTGCAGGACGGCGAACATGGATTGCCGGAAGACAC CAGCCTCAGTCACAACGAACCGATCCACGGCCTGCTCGACGAACGTTTCCAGGCGGCCCTGGCGGATGCCATCGCCAAGTTGCCGGAGCGCGAGCGCCTG GTGCTGGCGTTGTATTACGACGAGGAACTCAACCTCAAGGAGATCGGCGAGGTACTGGGCGTCAGCGAATCGCGGGTCAGCCAGTTGCACAGCCAGTGCG CCGCGCGTTTGCGCGCGCGCCTGGCCGATTGGCGGTCGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCGGCCTCGACCGCAGCTTGTAACCGTTAACGCAAAAGAATGTGTGGCGCGTCCCCTGGGGCGCGCTCTGGTCTGTACGGAGGTTTACTTGGACAAGAA CATGAAAATTCTCATCGTGGACGACTTTTCCACGATGAGACGCATCATCAAGAACCTCTTGCGGGACTTGGGCTTCACCAATACCGCCGAGGCCGACGAC GGCACCACGGCGCTGCCGATGCTGCACAGCGGCAATTTCGACTTTCTCGTCACCGACTGGAACATGCCGGGCATGACCGGCATCGATCTGCTGCGCGCGG TTCGCGCCGACGAGCGCCTCAAGCACCTGCCGGTGCTGATGGTCACCGCCGAGGCCAAGCGCGACCAGATCATCGAAGCGGCCCAGGCCGGGGTCAACGG CTATGTGGTCAAACCCTTCACCGCTCAGGTCCTGAAGGAAAAGATCGAGAAGATTTTCGAGCGGGTCAACGGCTGAAGCCGGCCAAGAGGGTGTCATGGT
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| Amino Acid Sequence |
>RNA polymerase sigma 70
MTAASGVRMYSKAQAQNSQEQLIQRYAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGKGASFETYAGIRIRGAMLDEVRKGDWAPRSVH RNTRMVTDAIRAIEARTGRDAKDHEVAAELQLSLEDYYGILSDTQGSRLYSFDDLLQDGEHGLPEDTSLSHNEPIHGLLDERFQAALADAIAKLPERERL VLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRARLADWRSA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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