Strain | Pseudomonas aeruginosa strain AZPAE14917 AZPAE14917_contig_2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TGCGACGCGCTGGACAAGGTCTATCGCGACAAGCGGGTAAGCCTGCAGCGGGACTTCTCGCCGTCCTTCAGCGTGCCGGTGGAGCGCGGCGCGCTGCTGG AACTGCTCGGCAACCTGCTGGAGAACGCCTATCGCCTGTGCCTGGGCCGGGTCCGCGTGGGTGCCCGGCTGGGGCCGGGTTACTCGGAGCTGTGGGTCGA GGACGATGGTCCCGGAGTGCCTGCCGAACAGCGCGCACGAATCATCCGCCGCGGCGAGCGCGCCGATACCCAGCACCCGGGGCAGGGCATCGGCCTGGCC GTGGCGCTGGACATCATCGAGAGCTACGACGGCGAACTGAGCCTGGACGATTCCGAGCTGGGCGGCGCCTGCTTCCGCATACGTTTCGCTACAGTCTGAG ACTTGGCGGCCGTTACCTACGTCTGAGGTGTTTCCGCGCTACGCTGAAGTCTGTTCGGCTGGCGCAGTTCCTTTGACGCAGGTACCGGGGATTCGAGCGG
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DNA Sequence for Gene |
>NS33_RS02520
ATGTTCAGTGGCAAAACCGACGACAGGGGCTTGTGGGCGGGCATCCAGGCCGGTGTGCTGTTCTTTCTCGCCGCCCTGGCCTGCATCTACCTGTCGCGCC AGCCCGCCACCATCGCTGCGATCTGGCTGCCCAACGCGATCCTCACCGCCGCCCTGCTGCGCGCGCCGCTGCGCCAGTGGCCGGCGATCCTGCTCTGCTC CGCCGTGGCCAACCTGGCGGCCAACCGCCTGTATGGCGACAGCCTGTGGATGAGCGCGGCGTTCCTGCCGGCCAACCTGAGCGAAGCGATCTTCGCCGCG ATGCTGTTACGCATCAACCGGGTGCGCGAGGACTTCGAATTCAACCTGCATTCGGCGGTTCGCGTGCTCTGGGCCGGCGCGCTGATTCCGCCCTTGCTCG GCGCCTCGGTGGGCGCGGTGCTGGTCAGCGTCTTCGGCATGGGGCGTTTCCCGGAAATGTGGGCGCGCTGGTACGTGGGCGATGCGATGGGCATGCTCGC GCTGCTGCCGTTATGCATGGCCAGCAACCTGGCGGCCTGGCGTCACGCTCTGTCGGGGCGGGCGGGAGTGGACAACGCGATGCTCCTGCTGGTGACCCTG GTGATCAGCTTCGTGGCCCTGACGCGCCTGCCCTACGCCTTCATCTACGTGCTCCTGCCGCTGCTGGTGGCCGCCGCCAGCACCAGCGTGTTCGGTACCG CGCTGATCGGTTGCCTGAACACCTGTTTCATCGCCGTGCTGATCGCCCTCGGCGTGTTCGTCCCCGAGTCGTCCCAGCAACGTTTCGGCGAGCCGCTGCT GTACCTGCCGATGGCCTTGACCCTCATTCCCGCCTTCCTGGTCTCGGTGATCATGGAGCGCAGCCGCCGCGAGCAGCATCAGGTGGCCATCGGCGAGGCG CAGTTCCGCGGCGCCATGGAATTCTCGGCGATCGGCATGGCCCTGGTGTCGCTGGAGGGGCGGCTGTTCAAGGTCAACGAGGCGCTGTGCCGGATGCTCG GCTATTCCGCCGAACGCCTGGGCGAGCTGTCGTTCCAGGAGATCACCTATGTGGACGACCTGGAACTGGACCTCGACCTGGTGCGCGACCTGCTCGCCGG GCGTATCAACTCCTACCAGATGGAGAAGCGCTACCTGCGCCAGGACGGCGAAACCTTCTGGGCGCGCATCAGCGTGTCGCTGGTGCGCGACGAGGAGGGA GTCGCCCAGTACTTCGTCACCCAGGTGGAGGATATCGACAGTCGCAAGCGTGCCGAGCTGGAGCGCGAGCGCCTCGCCGAACGGATCAAGCTGGCCACCG ACGCCGGGCAGATCGGCATCTGGGAGTGGGACCTGGCGCGCAACCGCCTGCACTGGGATTTCCGCATGTTCGACCTGTACGGCATCCGCAGCGGTCCCGG GGAGACCACGGTGGAGCAGTGGAAGGCGAGCCTGCATGCCGAGGATCACGACCGCGTGCTGCGCGAGCTGGAGCGCGCCGTCAGCGGGTTGCAGAAATTC GACTGCGAGTTCCGTATCGTCCGCCCCAACCGCGAGGTTCGCCACCTGCGGGCGATCGCCACGCTGACGCGCGACGAGGACAACCGTCCGGTGCGGATGA TCGGCATCAACAGCGACATCACCGAGATCCGCACCCTGGCGGAAACCCTGCACGAGGAAAAGGAACGCCTGCAGGTGACCCTGTATTCCATCGGCGATGC CGTGTTGACCACCGACGCCGGCGGCCGCGTGACCTTCATGAACCCGGTGGCCGAGGCGATGACCGGCTGGACCTTGCAGGACGCCATCGGCGCGCCCCAC GAACTGGTCTTCAACGTGCTCGACAGCGACACCGGCGAGGCCCTGGAAAGCCCGGTGCGACGCTGCCTGCAGAACACCCGGGTGTTCTACCTGGAGGACG GCGCCACGCTGATCAGCCGCAAGGGCGAGCAGCACGATATCCAGAATTGCGCGGCGCCGGTGCGCACCCGCGATGGCGAGATCATCGGCACCGTGCTGGT GTTCCAGAACGTCACCAAGGCCCGGGCGATGCAGCGCGAGCTGAGCTATCACGCCTCCCACGATGCCCTCACCGGGCTGTTCAACCGCACCAAGTTCGAG GAGGAGCTGCAACGCGCCCTGGCCAACGCCCAGGAGCGGGCGACCCAGCATGCGCTGTGCTTCATCGACCTCGACCGCTTCAAGGTGGTCAACGATTCCG CCGGGCACGCGGCGGGCGACATGCTGCTGCGCGAGCTGAGCCGGATTCTCGCCGACCGCACCCGCGCCTCCGACACCCTGGCGCGGCTGGGCGGCGATGA GTTCGGCCTGCTGCTGTTCGATTGCGACCTGGCGGAGGCGGAGCAGGTGGCGAGCAAGCTCATCGAGCAGATCTGCTCGGTGCGCTTCCCCTGGGAAGGG CGGCTCTACGACGTGGGCGCGAGCATCGGTATCACCGCCCTTACCGCCACCTCGCGCAGCACCAGCGAACTGATGAGCCAGGCCGACGTGGCCTGCTACG CGGCCAAGCATGCCGGGCGCAACCGGGTTTCGGTGTACCAGTTCGGCCATGAGGAAGTGGAGCGCCAGCACCGCGACATACTCCTCGCCAGCGGGCTGCG CGAGGCCCTGGAGAACGACCGCTTCCAGTTGCAGGCGCAGGAGATCGTCCCGGTCGGCCCCCGCCGCGACGGCGACCGGCACTACGAGCTGCTGCTGCGA CTGTACGATCCGGATGGCCAGATGACTCCGCCGGGCGCCTTCATCCCGGCCGCCGAGCGTTTCAACCTGATGGCCAGCATCGACCGCTGGGTGATCAACG AGGCGCTGATCAACTTCGGCGCGCGGATCGCCGCGGTGGAGGGCCTGAGCATCGGCATCAACCTGTCCGGCAACTCGCTCAACGACCCGCTGTTCCTGCC TTACCTGCTGGATCGCATCGAACACTCGCCGCTGAGGCCGGAGCGCCTGTACTTCGAGCTGACCGAGACGGCGTTGATGAACCAGTTGTCGGTGGCTTCG CGGATCGTCGCCAAGCTGCGCGACCTCGGCTGCAAGGTGGCGCTGGACGACTTCGGCTCCGGCCTGAGTTCCTTCAATTACCTGAAGAATTTCGTCGTCG ACGTAATCAAGATCGACGGCAGCTTCGTCCGTAACCTGGACAAGAGCCCGGTGGACCAGGCCATCGTCGACTCCATCAACCAGATCGCCCACCGCCTGGG CGCGGTGACCGTGGCCGAGTTCGTCGAGAGCCGGGAAATCCTCGATCACCTGGCGCGCCTCGGGGTGGATTTCGCCCAAGGCTACGCGGTCGGGCGGCCG CAGCCGTTCGCCACGGTGCTCGACCAACTGCGCAGCGGGCTTCGTCGCCAGGAGCTGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCTTCAGGCTTCCGCCTGGTGCCGGTACGCGCCGGGGGTGAGGCCGGTCCACTTCTTGAACGCGCGATGGAAGGCCGAGGGCTCGGAAAAGCCGAGCTGC TCGGCGATGTCCTGGATCGATAGCTCGTCCCGACCCAGGTGGTAGATCGCCAGGTCGCGGCGCAGGTGGTCCTTGAGTTGCTGGAAGCTGCCGCCTTCCT CGCGCAGGTGGCGTCGCAGGGTCTGCGAACTCATGTGCAGTTGGCGGGCGACCTGGTCGAGGTCTGGCCAGCGCCGGCAGTCGCGGCCGAGCAGGCGGCG GATCTGGCTGGTCAGGCTGTCGCCGCCGTCCGGGCGCGCCAGCAGGTCGGCGGGAGAGTACTGGAGGAACTGCTTGAGGGTGCGTTCGTCCTGCAGCAGC GGCATGCCCAGGTAGCGGGCGGCGAACAGCAGGCTGGTGCAGCCGGCGGAAAACCGCCGGGGGCAGGGAAACAGCAGGTCGTACTCGGCCTGGTGGTCCG
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Amino Acid Sequence |
>diguanylate cyclase
MFSGKTDDRGLWAGIQAGVLFFLAALACIYLSRQPATIAAIWLPNAILTAALLRAPLRQWPAILLCSAVANLAANRLYGDSLWMSAAFLPANLSEAIFAA MLLRINRVREDFEFNLHSAVRVLWAGALIPPLLGASVGAVLVSVFGMGRFPEMWARWYVGDAMGMLALLPLCMASNLAAWRHALSGRAGVDNAMLLLVTL VISFVALTRLPYAFIYVLLPLLVAAASTSVFGTALIGCLNTCFIAVLIALGVFVPESSQQRFGEPLLYLPMALTLIPAFLVSVIMERSRREQHQVAIGEA QFRGAMEFSAIGMALVSLEGRLFKVNEALCRMLGYSAERLGELSFQEITYVDDLELDLDLVRDLLAGRINSYQMEKRYLRQDGETFWARISVSLVRDEEG VAQYFVTQVEDIDSRKRAELERERLAERIKLATDAGQIGIWEWDLARNRLHWDFRMFDLYGIRSGPGETTVEQWKASLHAEDHDRVLRELERAVSGLQKF DCEFRIVRPNREVRHLRAIATLTRDEDNRPVRMIGINSDITEIRTLAETLHEEKERLQVTLYSIGDAVLTTDAGGRVTFMNPVAEAMTGWTLQDAIGAPH ELVFNVLDSDTGEALESPVRRCLQNTRVFYLEDGATLISRKGEQHDIQNCAAPVRTRDGEIIGTVLVFQNVTKARAMQRELSYHASHDALTGLFNRTKFE EELQRALANAQERATQHALCFIDLDRFKVVNDSAGHAAGDMLLRELSRILADRTRASDTLARLGGDEFGLLLFDCDLAEAEQVASKLIEQICSVRFPWEG RLYDVGASIGITALTATSRSTSELMSQADVACYAAKHAGRNRVSVYQFGHEEVERQHRDILLASGLREALENDRFQLQAQEIVPVGPRRDGDRHYELLLR LYDPDGQMTPPGAFIPAAERFNLMASIDRWVINEALINFGARIAAVEGLSIGINLSGNSLNDPLFLPYLLDRIEHSPLRPERLYFELTETALMNQLSVAS RIVAKLRDLGCKVALDDFGSGLSSFNYLKNFVVDVIKIDGSFVRNLDKSPVDQAIVDSINQIAHRLGAVTVAEFVESREILDHLARLGVDFAQGYAVGRP QPFATVLDQLRSGLRRQELG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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