Pseudomonas fulva 12-X, Psefu_2528
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva 12-X chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGGAGGTGATGCTCAAGGTTCTATATGGGCTCAAGAACTTCGAGGGCAAATCGAAGTTCAAGACCTGGCTGTACAGCATTACTTACAACGAATGCATCAC TCAGTACCGCAAGGAGCGTCGCAAACGTCGTTTGATGGATGCACTGAGTTTGGATCCTCTGGAAGAGGCGTCGGAAGAGAAGGCGCCGAAGATAGAGGAC AAAGGCGGACTGGATCGCTGGCTCGTGCATGTGAACCCGATTGACCGGGAAATTCTGGTGCTGCGTTTTGTCGCAGAACTCGAGTTTCAGGAGATCGCCG ACATCATGCATATGGGACTCAGTGCTACCAAAATGCGTTACAAGCGAGCGTTGGACCGATTGCGGGAAAAGTTTGCAGGTATTACCGAAAGTTAGTTCGG GGCAAGCTTTAACTGGCAAAGGTGAGTTTTAGTAAACTTACCGCAGACTCGCATGTCTACCTGCATGCGGATCAATCACTCATAGATGGGGATTTAACGG
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| DNA Sequence for Gene |
>Psefu_2528
ATGAAACTGAAAAACACCTTAGGCGTAGTCATTGGCTCCTTGGTAGCCGCTACCTCCATGGGCGTGCTGGCCCAAGGCCAAGGCGCTGTCGAGGTGGAAG GCTTTGCCAACCGCTACTTCACCGACAGCCAGCGTGATTTCGCTCACGACGAAGGCAACCAGTTCGGCGCTAGCGTTGGCTACTACCTGACCGACGATGT CGAGCTGGCACTGTCCTACGGCGAATACCACGACCTGCGTGGCGAAGGCGCTGCTGGCAGCAAGAACATCAAGGGCAACCTGACCGATCTGAAAGCCCTC TACCACTTCGGCCAGCCGGGTGTAGGCCTGCGTCCGTACGTTTCCGGCGGCGTTGGCCACCAGAGCATCGGCGACGCCAACAAAGGCGGCCGCGACACTT CGACTCTGGCCATCGTTGGTGGCGGTGCCAAGTACTACTTCACCGAAATGTTCTATGCTCGTGCAGGCGTTGAAGCTCTGTACAACATCGACAAAGGTGA CACTGAGTGGCAAGCCGGCGTTGGTGTTGGTCTGAACTTCGGTGGCAGCACCCGTCAGGTCGCTCAGGTAACTGAGCCGGCTCCAGAGCCTACCCCGGCT CCGGCTCCGGTCGTTGAAGAAGCTCCGCAAGTCGTTCGCGTTGAACTGGACGTGAAATTCGACTTCGACAAAGCTGCTGTCAAGCAAGAAAGCTACGGTG ACATCAAGAACCTGGCTGACTTCATGAACCAGTACCCGCAGACCACCACCACCGTTGAAGGTCACACTGACTCCGTCGGTACTGACGCTTACAACCAGAA GCTGTCCGAGCGTCGTGCAAACGCTGTTCGTGACGTGCTGGTCAACCAGTACGGTGTAGGCGCTGACCGCGTCAACTCGGTTGGTTACGGTGAGTCGCGT CCGGTTGCTGACAACGCTACCGAAGAAGGTCGCGCCATCAACCGTCGCGTTGAAGCTGAAGTAGAAGCCCAAGCCCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGGCTCAGGCATCATGAAAAACCCGGCTCAGGCCGGGTTTTTCTTTGCCTGCAGAAAAGTGCGGCACAAATAAGAACGGCATCTACCAGAACACCCGAT GGGGGAAGGTGGTCTGGCAGATGCCGTGTACGTTACCCGGCTTCCCATCTGAGGGTTGCCAGGCGATATTGTTGAGGTTAAAGCAAGCATCGCGCCAAGC TACTGGAGCGCAGTCGATGCCAGGAAGTCGGGCCAGGCAATGATGCGCAATCGAACCATCAGCGAGCACGTGTACGGTTAACGCCTCATCAGGAGGCAGG GCAGGCCCTGGCTTCTTCGACGTAATCCCTCAGCCAGCGCAGCACCTCGACGGCCTCCCAGCGATTGGGGTCGAACATCGCATAGGCCAATCCCTGATAA CCCACCACGTCAAGCTGGCGGTGATAGCCGGCCCGTTGCAGAAGCGCTTCGATCTCGGCGAAGCAGGTGTTGAAGTGCAGGCGGTTGAACGGCGTTTTAC
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| Amino Acid Sequence |
>OmpF family protein
MKLKNTLGVVIGSLVAATSMGVLAQGQGAVEVEGFANRYFTDSQRDFAHDEGNQFGASVGYYLTDDVELALSYGEYHDLRGEGAAGSKNIKGNLTDLKAL YHFGQPGVGLRPYVSGGVGHQSIGDANKGGRDTSTLAIVGGGAKYYFTEMFYARAGVEALYNIDKGDTEWQAGVGVGLNFGGSTRQVAQVTEPAPEPTPA PAPVVEEAPQVVRVELDVKFDFDKAAVKQESYGDIKNLADFMNQYPQTTTTVEGHTDSVGTDAYNQKLSERRANAVRDVLVNQYGVGADRVNSVGYGESR PVADNATEEGRAINRRVEAEVEAQAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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