Pseudomonas aeruginosa AZPAE15033, NT49_RS23785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain AZPAE15033 AZPAE15033_contig_30, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAGAATCCGCGGCCCTTGCAGGGACCCCGGGTCGAGACGGTGCTGCTCCATGGAGCGGCGCCAGGAGTCGAGGATCGGCGTCGGCACCGGCGCCTGCGG CAGGCGCGCGGCGTTCCTCAGGACACGGCTGACACAGTCCACATGGTCCTTCGAGTGTGCGGAAAGCATGGGGCCTCCGTTGCTCGGCATCTTGTTGTTG TGCCGCCCATTAAGCGCCCATCGGCGACCCTCGACAAGCGCCGGGCCGCCACAGCCGACGACTGAGACGGAGCGTCTCAGCGTCTCGCCGGGAACCCGTG CGCGATGACATGGGTTGTCTCGCCGGACGTCGCCCCGGCGGTCGCCGGCCTTCCCATGCCGGCGCTCTACGACGGGACTTCCGGCCGCCACGCCGCAACC TGGCATCGGCCTTGCTCCAGCCACGGCGACGGCAGGGCGGACTGTCCGCTCCTCCCAACGCCCTGCCGCATACACCTACAAGAACAATCAGAGGTGAAGC
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| DNA Sequence for Gene |
>NT49_RS23785
ATGCACGCTACGTCGTCCGACGATTTCTCCCTGTCTTCCCGGGTCGCGCTGGTGACCGGCGCCGGACGCGGCATCGGCCGGGGCATCGCCCTCGCCCTGG CGCGCGCCGGCGCCGACGTGGCGGTGGCCGACCTCGATCCGCAGGTCGCCGAGGAAACCGCCGCCGCGATCCGCAGCCTCGGTCGCCGCAGCCTGGCCCT TGGGGTCGACGTCAGCGACGGCGACAGCGTCCGGGCGATGGTCGAGCGGGTCGCCACGGAGTTCGGCCGGCTCGACGTGGCGGTGAACAATGCCGGGGTG ATCAGCATCCGCAAGGTCGCCGAACTCAGCCTCGCCGACTGGGACCGGGTGATGAACGTCAACGCCCGCGGCGTGTTCCTCTGCTGCCAGGCCGAACTGC CGCTGATGCAGGCGCAGCGCTGGGGGCGGATCGTCAACCTGTCATCGATCGCCGGCAAGGTCGGTCTCCCCGACCTCGCCCACTACTGTGCCTCGAAGTT TGCCGTGATCGGTTTCAGCAATGCCCTGGCCAAGGAGGTCGCGCGCGACGGGGTGACGGTCAACGCGCTCTGCCCGGGAATCGTCGGCACCGGAATGTGG CGCGGCGAGGACGGCTTGTCGGGCCGCTGGCGGCAGGCCGGCGAAAGCGAGGCGCAGTCCTGGGAACGCCACCAGGCCAGCCTGCTGCCCCAGGGCGAGG CGCAGACCGTCGAAGACATGGGCCAGCTCGTCGTCTACCTGGCCTGCGCGCCGCACGTCACCGGCCAGGCCATCGCCGTCGACGGCGGATTCTCGCTATG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCGCCCTCGCCGATCGTCGGCATCATCGCCAACCCGGCCTCCGGTCGCGACCTGCGTCGCCTCACCGCCCATGCCGGGCTGCACTCCAGCACCGACAA GGCATCGGTGGTGCAACGCCTGCTCGCCGCCTTCGGCGCCACTGGCATCCGCCATGCGTTGCTGCCGCCGGACATGACCGGCATCGCCGCCGCCGTGCTC CGGGCCAGCCAGACCCGCCAGGCCCGCGACGGCCACTGGCCGTTCCTGGAGTTCCTCGACATGCCGCTGCGCCAGAGCGTCGAGGATACCCGCCTGGCGG CGCGGCGCATGGTCGAGCGCGGCGTGGCGCTGATCGCCGTGCTCGGCGGCGACGGCACGCACAAGGCAGTGGCCGCCGAGGTCGGCGACGTCCCCTTGCT GGCGCTGTCCACCGGGACCAACAACGCTTTCCCGGAGCTGCGCGAAGCCACCGGCGCGGGGCTCGCCGGCGGCCTCTGCGCCAGCAACCGGGTGCCGCCG
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| Amino Acid Sequence |
>short-chain dehydrogenase
MHATSSDDFSLSSRVALVTGAGRGIGRGIALALARAGADVAVADLDPQVAEETAAAIRSLGRRSLALGVDVSDGDSVRAMVERVATEFGRLDVAVNNAGV ISIRKVAELSLADWDRVMNVNARGVFLCCQAELPLMQAQRWGRIVNLSSIAGKVGLPDLAHYCASKFAVIGFSNALAKEVARDGVTVNALCPGIVGTGMW RGEDGLSGRWRQAGESEAQSWERHQASLLPQGEAQTVEDMGQLVVYLACAPHVTGQAIAVDGGFSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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