Pseudomonas fulva 12-X, Psefu_2018
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0009094 | L-phenylalanine biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01807
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0046417 | chorismate metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.59.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0004106 | chorismate mutase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01807
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01807
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0004664 | prephenate dehydratase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF00800
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | bacilysin biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfv01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | salinosporamide A biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfv01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | L-phenylalanine biosynthesis III (cytosolic, plants) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | L-phenylalanine biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfv01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | L-tyrosine biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| MetaCyc | L-tyrosine biosynthesis III | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | pfv01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pfv00400 | Phenylalanine, tyrosine and tryptophan biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.40.190.10:FF:000029 | Chorismate mutase/Prephenate dehydratase | - | - | 103 | 183 | 3.2E-36 |
| SMART | SM00830 | CM_2_4 | IPR002701 | Chorismate mutase II, prokaryotic-type | 15 | 99 | 2.9E-27 |
| FunFam | G3DSA:1.20.59.10:FF:000004 | Prephenate dehydratase | - | - | 9 | 100 | 1.1E-32 |
| Gene3D | G3DSA:3.30.70.260 | - | - | - | 279 | 368 | 2.2E-27 |
| Pfam | PF00800 | Prephenate dehydratase | IPR001086 | Prephenate dehydratase | 101 | 278 | 4.7E-62 |
| FunFam | G3DSA:3.40.190.10:FF:000034 | Chorismate mutase/prephenate dehydratase | - | - | 184 | 265 | 6.8E-32 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 100 | 285 | 4.99E-61 |
| Pfam | PF01817 | Chorismate mutase type II | IPR002701 | Chorismate mutase II, prokaryotic-type | 15 | 96 | 3.1E-21 |
| SUPERFAMILY | SSF55021 | ACT-like | IPR045865 | ACT-like domain | 271 | 366 | 7.75E-28 |
| NCBIfam | TIGR01807 | JCVI: chorismate mutase | IPR010957 | Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain | 11 | 89 | 2.2E-29 |
| CDD | cd13630 | PBP2_PDT_1 | - | - | 98 | 278 | 6.78148E-106 |
| Coils | Coil | Coil | - | - | 4 | 31 | - |
| FunFam | G3DSA:3.30.70.260:FF:000012 | Prephenate dehydratase | - | - | 279 | 369 | 4.7E-35 |
| Gene3D | G3DSA:1.20.59.10 | Chorismate mutase | IPR036979 | Chorismate mutase domain superfamily | 7 | 98 | 1.1E-24 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 181 | 265 | 4.0E-59 |
| PIRSF | PIRSF001500 | Chor_mut_pdt_Ppr | IPR008242 | Bifunctional P-protein, chorismate mutase/prephenate dehydratase | 4 | 369 | 0.0 |
| PANTHER | PTHR21022 | PREPHENATE DEHYDRATASE P PROTEIN | - | - | 66 | 365 | 1.2E-79 |
| CDD | cd04905 | ACT_CM-PDT | - | - | 286 | 365 | 1.38783E-37 |
| SUPERFAMILY | SSF48600 | Chorismate mutase II | IPR036263 | Chorismate mutase type II superfamily | 6 | 98 | 5.13E-18 |
| Pfam | PF01842 | ACT domain | IPR002912 | ACT domain | 287 | 351 | 2.9E-11 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 103 | 274 | 4.0E-59 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.