Pseudomonas fulva 12-X, Psefu_1877
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva 12-X chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGTGGCGTTTCATCCGCATCACCCGTCCGGCGCTGCGTGAAGACATTTACCGGTTGGTCGAGCGCGAGCGCCAGCTGACCGCCGAGGCTCTGGGCGAGCG CTCGGACGAATTCATGCGGCTGAAGGTCGAGGGCGTTCGCGACTGCGCCGAAGTGCTGGTGGCGGCCTTGATGGAAGGCCGCGAGGCCCACGTGTTCGGC CGGCGCACCTTGCCGGAAATGGACATGGCCTCGCTGTCCTGCGCGATCCAGAACCTGTGGCTGGCGGCCCGTGCCGAAGGCCTGGGCATGGGCTGGGTGT CGCTGTTCGACCCCGTCGCCCTGGCCGAGCTGCTGGGCATGCCGCCGGGCAGCAAGCCGGTCGCGGTGCTCTGTCTGGGACCGGTGCAGGCCTTTTACCC GGCGCCGATGCTGGCCCAGGAAGGTTGGGCGCAAGTGCGGCCGCTGCACGAACTGCTGTTCGAGGACCGTTGGGATCAGCATGAATAACGAGAACCGTCC
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| DNA Sequence for Gene |
>Psefu_1877
ATGAGCCTGATCCTCAGCGCTGTCGCGGGCGTGGCTATGGATGCCGCCCTCGGCGAGCCGAAGCGCTGGCACCCGCTGGTGGGTTTCGGCAAGCTGGCCA ACCGCCTGGAGCAGCGCTTCAACCCATCCGGTGGCGGCTGGCGCAGCCATGGCGTGAGCGCCTGGTGCCTGGCGGTGCTGCCGTTGACGCTGCTTACCGT GCTGCTGGTGCAACTGCCGTGGATCGGCTGGCTGGTGCAGATCGTCGCCCTGTACGCCGCCCTGGGGCTGCGCAGCCTCGATCAGCACGCCCAGCCGGTG GCCCAGGCGCTGCGCCTGGGTGATCTGCCGGTGGCTCGCCAGCGAGTGGGCTATATGGTCAGCCGGCGTACCGAGGATCTGGACGCCACTGGCGTGGCCC GTGCGGGTACCGAGTCGGTGCTGGAGAACGGCAGCGATGCGGTGTTCGCCGCGCTGTTCTGGTTTCTCGTCGCCGGGGCGCCGGGCGTGGTGCTGTACCG CCTGAGCAACACCCTGGACGCCATGTGGGGCTACCGCAACGAGCGCTTCGAGCGCTTCGGCTGGGCCGCCGCGAAGATCGATGATCTGCTCAATTACGTG CCGGCCCGGCTGGTGGCGCTGACCTACGCCGTACTGGGTCACAGCGCCCTGGCGATGCGTTGCTGGCAGCGCCAGGCACCACGATGGGACAGCCCCAACG CCGGGCCGGTGATGGCCGCGGGAGCGGGTGCGCTGGGCGTCAGTCTCGGCGGCGCGGCGGTCTATCACGGTGAGCTACACCAGCGCCCCGAGCTGGGCGA AGGCCCGCCGCCACGGGCGCGGGATATCGAGCGGGCGATGAACCTGGTGTGGGGCGGCGTGCTGCTCTGGTTGCTGCTGATGCTGATCGTGGAGGTGTGC ATTGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGCGGGCGGTTGCGCAAGGCGGCGCTTCGCTATGGTATTGCGCTGGGCGACTGGCTGGACCTTTCGACCGGCGTGGCGCCATACGGCCTGCCGCTT CCGGAAATTCCCGCGCAAGCCTGGAACCGCCTGCCGGAGCAGGACGACGGCCTGGAAACCGCCGCCTGCGCCTATTACGGCGCTGCCGACCTGCTGCCAG TGGCCGGCTCCCAGGCGGCGATCCAGTGCCTGCCGCGGCTGCGCCGCGAGGCACGGGTCGGCATCGTCTCGCCGGCCTACGCCGAGCACGCGGCGGCCTG GCAGCGTGAAGGGCATCGGGTGCTGGAGATCAGCGAGGCCGGCGTCAATCGCGCCCTGGAACGGATCGACGTGCTCTTGCTGGTCAACCCCAACAACCCT ACCGGGCGGCGGTTTTCCCCCGAGCAGCTGTATGCCTGGCATGCGCGTCTGGCCGAGCGGGGCGGCTGGCTGATCGTCGATGAAGCCTTTGTCGACTGCA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSLILSAVAGVAMDAALGEPKRWHPLVGFGKLANRLEQRFNPSGGGWRSHGVSAWCLAVLPLTLLTVLLVQLPWIGWLVQIVALYAALGLRSLDQHAQPV AQALRLGDLPVARQRVGYMVSRRTEDLDATGVARAGTESVLENGSDAVFAALFWFLVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDLLNYV PARLVALTYAVLGHSALAMRCWQRQAPRWDSPNAGPVMAAGAGALGVSLGGAAVYHGELHQRPELGEGPPPRARDIERAMNLVWGGVLLWLLLMLIVEVC IA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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