Pseudomonas fulva 12-X, Psefu_0021
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva 12-X chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAACCGCGTGGCACCGTCGACCAAGGAAGGCATCCTCAGCGTCATCAAGGAAGTGCGCAAGGGCGGCGCGGTGGGTATTCCGGCCGACCCGGAGCCGAGC CTATCGGCTGGCATGTTCGTGCCCTTCTGCGGCACCATGGCGCTGACCAGCAAGTTCGTGCCGGGCATGCTCGCTGGCGGCAAGGCCGTCGGCGTGTTCC TGCACGCGCTGCGCCTGGAAGATGGCTCCGGCTACAAGGTGATCCTCGAAGCCGCCCCCGAAGCCATCTACAGCGAAGACACCTACACCGCCGTGGCGGC CATGAGCAGCGTTGTCGAGAAGTACGTGCGCGCCTATCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAAACGCCCCGAGGGCGAGGAACGCTGG TACTGAAATTTGCGGCGCCTCGCAATGAGGCGCCGTTTCGCTGGGCTTGTGCGGCGATTTGCGCTATTAACAGGGCACACCTTTCCGAGGCTGCCAGGTC
|
|
| DNA Sequence for Gene |
>Psefu_0021
ATGTCCGCCAACCAGCGTCAGCACCCCCGTACACCGATGAAATGCCGCATCAAGATCTGCCACCCGAGCTTCGGCGAGCTGGTCGCCCAGACCCGCGATC TTTCCGACGGCGGCGTGTACGTCAAGCATGACGACCTGGCCGCCTTGGAGCCTGGTACCCGGGTGACCGGCCAGGTGCAGGATCTGCCCATGGAAGCGCC GATCCTGGAGATGGAAGTCATGCGCGTGACCCCCGAGGGCGTGGGTCTGCGCTTCGTTCGCGATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTTTCCTGCCTGCATTCAGCCTTGTCACCCTCAGTGCGCCTCGTTAACTGCGCTCAGAAAAGCCTGAGTGCGCTCTTGTTGGGGGTTGCCGAACAGCTCT GCCGGCGTGCCCTGTTCGTGAATGCAGCCCTGGTGAAAGAAGCACACGCGATCGGCGAACTCGCGGGCAAAGCCCATCTGGTGGGTAACCATCAGCATGG TCAGATTGTGTTCGCTGCCCAGGCGGCGGATCACGTTGAGCACCTCGCCGCACAGCTCGGGATCGAGTGCCGAGGTCACCTCGTCGAACAGCATCACCTT GGGCCGCATCGCCAGGGCGCGGGCGATGGCCACGCGCTGCTGCTGACCACCGGACAGCTGCGAGGGAAAATGGCGTAGCTTCTCGCCCAGGCCGACCATG GCCAGCAGCTCCTCGGCGCGCTCGGTGGCTTCCTTCTTGCCCATGCCGAGTACCTGTACTGGCGCCTCAATGACATTCTGCAGCGCGCACATGTGCGGGA
|
|
| Amino Acid Sequence |
>type IV pilus assembly PilZ
MSANQRQHPRTPMKCRIKICHPSFGELVAQTRDLSDGGVYVKHDDLAALEPGTRVTGQVQDLPMEAPILEMEVMRVTPEGVGLRFVRD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|