Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_4262

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psp02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 28 528 0.0
PIRSF PIRSF002741 MppA IPR030678 Peptide/nickel binding protein, MppA-type 27 530 7.6E-110
PANTHER PTHR30290 PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER IPR039424 Solute-binding protein family 5 13 528 4.7E-112
FunFam G3DSA:3.40.190.10:FF:000036 Dipeptide ABC transporter, substrate-binding protein - - 206 296 2.7E-28
Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IPR000914 Solute-binding protein family 5 domain 68 449 7.5E-94
CDD cd08493 PBP2_DppA_like - - 27 515 0.0
FunFam G3DSA:3.90.76.10:FF:000002 Dipeptide ABC transporter, substrate-binding protein - - 45 205 2.3E-78
Gene3D G3DSA:3.90.76.10 - - - 43 204 0.0
Gene3D G3DSA:3.10.105.10 - - - 286 505 0.0
Gene3D G3DSA:3.40.190.10 - - - 205 519 0.0
FunFam G3DSA:3.10.105.10:FF:000002 Dipeptide ABC transporter, substrate-binding protein - - 287 506 1.0E-94

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.