Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_3904
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCTGGTACTTTCTGGTGCCCGACCTGCTGCCGGAAAACCTGCAGGAGTGGTACAAGCAGGACCTCAACCCGACTACCTCCGCGTTCCTGAGCGTGGTGG TCTGTCTGGGTCTGTTTACCGCTGCACGGGTCTGCGAACAGGTGCGTACCGGCATTGAAGCACTGCCAAAGGGCCAGGAATCGGCCGCGCGTGCAATGGG CTTCAAGCTGCCGCAGATCTACTGGAACGTGCTGTTGCCACAGGCTTACCGGATCATCATTCCACCGCTCACTTCCGAATTCCTGAACGTGTTCAAGAAC TCGTCGGTAGCATCGCTGATCGGCCTGATGGAGCTGCTCGCGCAGACCAAACAGACCGCCGAGTTTTCCGCCAACCTGTTTGAAGCCTTTACGCTCGCAA CCCTCATCTACTTCACGCTGAACATGAGCCTGATGCTGCTGATGCGCATGATCGAGAAGAAAGTCGCTGTACCCGGACTCATCTCGCTGGGGGGCAAATA
|
|
| DNA Sequence for Gene |
>PSPPH_3904
ATGGACTTCACTGGAATCGTTCCGGCCATTCCCGGCCTGTGGAACGGCATGGTCATGACCCTCAAGCTGATGGCAATGGGTGTTGTCGGCGGCCTGGTGC TTGGCACTTTGCTGGCGTTGATGCGCCTGTCATCAAACAAGCTGCTGGCCAATGTGGCTGGCGCTTACGTGAACTACTTCCGTTCGATCCCGCTGCTGCT GGTGATCACCTGGTTCTACCTCGCAGTGCCATTCGTGTTGCGCTGGATTACCGGTGAAGACACGCCCATCGGGGCCTTCGCCTCATGCGTCGTGGCCTTC ATGATGTTCGAAGCCGCGTACTTCTGCGAAATCGTCCGTGCCGGCGTGCAGTCGATTTCCAAAGGACAGATGGGCGCAGCCCAGGCGCTGGGCATGAATT ACTCGCAGATGATGCGACTGATCATCCTGCCCCAGGCGTTTCGCAAGATGACGCCGCTGTTGCTGCAACAGAGCATCATTCTGTTCCAGGACACCTCTCT GGTGTACACCGTGGGCCTTGTGGACTTTCTCAATGCATCGCGCTCCAGTGGCGACATCATCGGGCGCGCCAACGAGTTCCTGATCATTGCCGGTCTGGTG TATTTCACGATCAGCTTTGCCGCCTCGCTGCTGGTGAAGCGTCTGCAAAAAAGGTTTGCCGTATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTCCATCAAAAACGTCAACAAATGGTATGGCGAGTTCCAGGTGCTGACCGATTGCAGCACCGAGGTCAGCAAAGGTGAAGTGGTTGTGGTGTGCGGGCC CTCCGGTTCCGGCAAGTCGACCCTGATCAAATGCGTGAATGCGCTGGAACCGTTTCAAAAAGGCGACATTGTCGTCGACGGCACATCGATTTCCGACTCG AAGACCAACCTGCCAAAACTGCGCTCGCGGGTCGGCATGGTGTTTCAACACTTCGAACTGTTCCCGCACCTGAGCATTGTCGAAAACCTGACCATCGCGC AGATCAAAGTACTGGGTCGCAGCAAGGCCGAAGCGACCGAAAAAGGCCTGAAATTGCTGGACCGCGTCGGTCTCTCCGAGCATGCGCACAAGCATCCCGG GCAGCTTTCCGGTGGTCAGCAACAGCGTGTTGCCATCGCTCGCGCCCTGGCGATGGACCCGGTGGTCATGCTGTTTGACGAACCGACGTCTGCGCTGGAC
|
|
| Amino Acid Sequence |
>amino acid ABC transporter permease
MDFTGIVPAIPGLWNGMVMTLKLMAMGVVGGLVLGTLLALMRLSSNKLLANVAGAYVNYFRSIPLLLVITWFYLAVPFVLRWITGEDTPIGAFASCVVAF MMFEAAYFCEIVRAGVQSISKGQMGAAQALGMNYSQMMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLNASRSSGDIIGRANEFLIIAGLV YFTISFAASLLVKRLQKRFAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|