Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_2421 (ftrA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCCAGCAGAAAGGCACCGGTGCACACGGCAGCCACTACGCGACCGGGTTCCGACTGATCGCTGATCCAGTGGATCACGTCGGGTTTTTCCAGTTCGGC GGTCACGACCCCGCCCGGGACGATCAGGCAGTCGATGGCCGGATGGTCGTTGATCGAAAAGTCCGGATCGACCTTGAGCCCGGCGCGGGCACGCACTGGT GCGGTGCTGCGCCCGATGGTGAACACATTGAACAACTGCCGGTCATCGCGGCTGTTGCGAGCATGCATGCGTGTTGCGGTGGTGAACACTTCGTAGGGGC CAGCGAAGTCGAGAACCTCGACGTCGTCATAAACGTAGATACCGATATTGAGTGGCACGAGTTGGCTCCAGGGCCTGCATGGCAGACCACTTGCATCATA TTAAGGTTTAAGCAGTTTCAAGCGGTGACAGGGTGCAGATTACCCAGTAGCATCACGCCAAACTACTGGCTGAAATGCCAATATCCGGTAACATCGCGCC
|
|
| DNA Sequence for Gene |
>PSPPH_2421
|ftrA
ATGAAAAATCATCTCGTTGTCGCACTCATCTACAACCAGTTGTGCACCTTCGAATTTGGCTGCACGGTCGAAGTATTTGCGCTGAAAAGACCTGAACTGG GGGTCAACTGGTACGAATTCGCGACCTTCCCGGTCGACGATGGGCCGATCACCGCCGCCGGGGGCATTACCATCGTGCCAACGCCTGGCGAAGTGCTGCT GGAGAATGCCGATACAATCATCGTGCCAGGCTGGCGCGGAGTGGAGTCCGCAGTTCCGCAGCGGCTCATCGAACAGCTCCAGGCTGCTCATGCACGCGGC GCGCGGATCTGCTCGATCTGTACAGGCGCTTTCGTTCTGGCCGCGGCCGGTTTGCTCGACGGGCACAAGGTCACCACCCACTGGCGCTACACCGACCTGC TGGCAACCATGTATCCGGGCCTGACCATTCAACCCAACGAACTGTATGTGGACCAAGGCACTATCGTGACAGCTGCGGGCTCGGCCGCAGGGCTGGACAT GATGCTGCACCTGGTGCGCAACGATCACGGCTCGCGCGTTGCCAACATGGTGGCGCAGCGCATGGTCATCCCGCCTCATCGCGAAGGCGGGCAATCGCAA TATGCGTCCCGGCAACTGGTGTCGGCCAGCGACGGGCCGATTTCCAACCTGATGGACTGGATCCGCAGCGATCTGCAGCGCCCTCACACCATCAAGGAAA TGGCCTCAAGGGCGGCGCTCAGTACCCGCACTTTGCACCGCAGCTTTATGGAAAGTACCGGCCTTACGCCTTACGACTGGCTGCTCGGCGAGCGCATTGC CTACGCCAAGGAATTGCTGGAGTCCTCGAAGCTGCGTCTCAACGAAGTAGTGGACCGCGCCGGTTTCGGCTCCGAAGAGTCTTTTCGCCGACACTTCCGC AATCTGGTGGGCATCAGCCCGAGCAGCTATCGCAAGCAGTTTGCCCGGGCGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCTCGGGCCTCGCGCAGAGCGCATCGACAAGCGTATCGGCAAACTCACCCCACGCGCCCGCAACAGCCGTGTTGGTCAAGACGACCATGCTGAGCGCAGA AACCGGATCAACCCAGTAATGACTGCCATACAAGCCGCACCACGACCAGGTCCCGACACCCTGTTGCTGCCCCCGCACCGCAGCGGGATCGGCAAGGATC ATCGGCCCCAGGCCGAACTTCCAGCCAGGCCCCCGACTGGCAATGGTTATGCTTCCAATCGCATTATTCAGCAAGCGCTCGGTACTGACGGCGCTCAATA ACGGCGCGCCCCCCAGACGCAGGCATTCGAGCAGCCGAAGATAGTCATCAGCCGTGCCCAGCATGCCTGCCCCGCCAGATTCATATGCGCCTGCGTCGCG AGCCCGAGCCGACGACAACCGCGCCTGTCCGCTGTCGAGCAACAACACATCATTGTCACCGATACGCTGCGGGCCGTTGACACTGTCCTTGTAGGCGCTG
|
|
| Amino Acid Sequence |
>transcriptional activator FtrA
MKNHLVVALIYNQLCTFEFGCTVEVFALKRPELGVNWYEFATFPVDDGPITAAGGITIVPTPGEVLLENADTIIVPGWRGVESAVPQRLIEQLQAAHARG ARICSICTGAFVLAAAGLLDGHKVTTHWRYTDLLATMYPGLTIQPNELYVDQGTIVTAAGSAAGLDMMLHLVRNDHGSRVANMVAQRMVIPPHREGGQSQ YASRQLVSASDGPISNLMDWIRSDLQRPHTIKEMASRAALSTRTLHRSFMESTGLTPYDWLLGERIAYAKELLESSKLRLNEVVDRAGFGSEESFRRHFR NLVGISPSSYRKQFARA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|