Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_1128 (rhlB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 92 474 51.783783
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 117 292 3.0E-48
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 73 307 2.2E-74
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 355 436 4.0E-30
MobiDBLite mobidb-lite consensus disorder prediction - - 52 72 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 168 457 1.54E-71
MobiDBLite mobidb-lite consensus disorder prediction - - 1 72 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 310 477 2.8E-46
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 112 319 1.7E-51
CDD cd18787 SF2_C_DEAD - - 316 444 6.42874E-56
CDD cd00268 DEADc - - 104 305 4.26309E-93
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 327 436 1.7E-28
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 89 472 9.3E-122

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.