Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_1116
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAATAACCTTCGTCAGAACTCGCGTGCACTGGGTCTGGGCGTACGTCGCCTGGGGATTTTCACCAGCATCGTACTGTTCGACCAGCGGGTGTCGATGTGG ACCTCCATCCTCGGTCTGACCGTCGCCCTGATCGCCAGCTTCAAGTATGGCGGCGCGTTCCTGTTGATGTATCTGCTGTGGATCGGCATGACCCGTCTGA TCCTCACCCTGCTGCTGTCCCTCTCGGGACACAGAATCGGGCCTGCCTACCCGATCATTCTCTATTACAACCAGATCGTCGGCGCGCTGATGAAGATCTA TGTCTTCTTCCGGCTGGACCGCCAGTCCTGGACACGCCAGGACACCAAACTGAGCCGCGACATGGCCAGCTTTCAAGGCTGGTTCAACACGTGGTCGTCC CGAACCATGACTTTCTCGGCTGGCACCATCTTCGTCGCTGTGCTGTTGACGATGGTTTGACCGGGCCAACGGATTAATCGCTTAAGTAGGAAAATTAGCC
|
|
| DNA Sequence for Gene |
>PSPPH_1116
ATGAATACAGCCGTGAATGCGAACGTCGTACATGAATCCGAAGCCCAGCGCCAACACGCGCGGATCAAGATCCCTGCCAAGCTGCGCCTGCTGAATGATC AGCCCAACGCGCCACTGGTACGTATCGAAGACCTGTCGGCCGGTGGCCTGAGCTTCGTTGCTCCGTCCGGGCAGAAATTCAGCGAAGGGCAGATCGTCAA GGGACGCCTGCAATTCATCATCGACAACCTTGGCCTGGCCATGGACGTCGATCTGCAGGTGCGCTCGATCGACAACGCCAGCAACCGCATCGGTTGCCAG TTCCAGAATCTGGAACCTCAGGACATCGCTACCCTGCGCCACCTGATCACCTCGCACCTGTCCGGCGAAGTCGTCACCCTGGGCGAAGTGCTGGCCACGC TGCAGCGCGACAACTTCACCAAGGCACGCAAGGTCAAGGGCAAGGACAGCGGCATGAGCGCCATGGGTCGCCTGCGCGCCTTGACCTTCAGCCTGGGCGT GTTCATTGTCGGTCTGGCCGCTTTCGGCTTCATCTTCAAGACAATCTACGGCCTGTACTTCGTCAGCCATGCGTCGGCCGGTCTGGTCACCATTCCAAGC ATGGACGTGACCATGCCACGTGAAGGTACCGTACAAAGCCTGGTCGCCCAGAATGGCGAAGCCGCCAAAGGCGCGCCACTGGCAACCTTCAACACCAGCA TGCTGGAAATGCTCAAAGGCAGCCTGACCGGTGAAGACCTGCAGCCCGCCAAGATCGAAGAGCTGTATGGCAAGCAGATGAGCGGCACAATGACTAGCCC GTGCGATTGCGTCGTGGCTCGCCAACTGGTTGCCGACGGTCAGTTCGCGTCCAAGGGTCAGGTGATCTTCCAACTGGTGCCACGCAACGCGCCGGCCACT GTTGAAGCTCGCTTCACCTATCGCCAGTTCAACGACGTCAAGCCAGGCACACGTGTCAGCTTCCAGATCGCTGGCGAAGACAAACTGCGCACTGGTCAGA TCGTCAGCAGCACCAACCTCAGCGACGCCGACCTGTCCACTGACATCCGCGTGCAGATCAAGCCTGACGAAAGCCTGAGCAGCTCGCTTGCCGGTCGCCC TGTCGAAGTGGTCAGCGATCGCGGCCCGTCCGTGAACTGGCTGATCGATAAAGCAATGGCTGCGGGTCTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATGAACAGCCCACTACGACGCCTGTCGACCCCCACGCTACTGAGCCTCGCCGTCGCGCTCGGCCTGAGCGGCTGTGCCGGCCTGCCTGATCAACGCCT TGCCAATGAAGCCCTGAAAAACGGCGACACTGCATTGGCGGAGCAGAACTATCGGCAGCTGGCGGACCTGGGCTACAGCGACGCGCAAGTCGGCCTTGCT GATATTCAGGTCGCGACTCGCGACCCGGCTCAGCTCAAGCAGGCCGAGGCTACCTACCGCGCTGCCGCGCAGACCTCCCCTCGGGCGCAGTCGCGCCTGG GCCGTCTGCTGGCGGCCAAGCCCGACGCTACCGAAGCCGAACATCGCGAAGCCGAAGGCCTGCTGAAAAAGGCCTTCGCCAATGGCGAATCCGGCACCCT GATCCCGCTGGCGATGTTGTATCTGCAATACCCGCACACCTTCCCTGAAGTGAATGCGCAACAGAAGATCAGTGAGTGGCGCGCTGCCGGTTATCCGGAG
|
|
| Amino Acid Sequence |
>alginate biosynthesis protein Alg44
MNTAVNANVVHESEAQRQHARIKIPAKLRLLNDQPNAPLVRIEDLSAGGLSFVAPSGQKFSEGQIVKGRLQFIIDNLGLAMDVDLQVRSIDNASNRIGCQ FQNLEPQDIATLRHLITSHLSGEVVTLGEVLATLQRDNFTKARKVKGKDSGMSAMGRLRALTFSLGVFIVGLAAFGFIFKTIYGLYFVSHASAGLVTIPS MDVTMPREGTVQSLVAQNGEAAKGAPLATFNTSMLEMLKGSLTGEDLQPAKIEELYGKQMSGTMTSPCDCVVARQLVADGQFASKGQVIFQLVPRNAPAT VEARFTYRQFNDVKPGTRVSFQIAGEDKLRTGQIVSSTNLSDADLSTDIRVQIKPDESLSSSLAGRPVEVVSDRGPSVNWLIDKAMAAGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|