Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_1111 (algL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0045135 poly(beta-D-mannuronate) lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05426
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042122 alginic acid catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00244
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psp00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00557 Alginate lyase [algL]. IPR022859 Alginate lyase 2 371 66.666748
MobiDBLite mobidb-lite consensus disorder prediction - - 361 380 -
CDD cd00244 AlgLyase IPR022859 Alginate lyase 24 363 0.0
Gene3D G3DSA:1.50.10.100 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 28 364 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 360 380 -
SUPERFAMILY SSF48230 Chondroitin AC/alginate lyase IPR008929 Chondroitin AC/alginate lyase 22 363 1.1E-68
Pfam PF05426 Alginate lyase IPR008397 Alginate lyase domain 65 305 6.2E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.