Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0083
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGCAATGTTCACCGGCCTGATCGCACGGCACCGCGAACTGATGCGACACCCGATAACACTTCTCGCCCACATGTGGCGTGCCTTCAACGCCGAACTGA CGCTGATAGGCGGTGTTGGCCGCGATAATGTTGTAGTCGGTGTCCAGAACGATGGTCGGTCGCAGGTCATGTTCGAGGTATGACACCAGCGACTGCATGC GACTGCCGGGTAAATCAGTGGCGATGAGGGTCATGCTTGCTCCTGTGGATTGGCCGCAGCTTAACCCATCTCGCTGCCAGCTTATGCCACCGTCTGCCAA GCGACTGCCAGAATGTGGCAGTCAGCGCCTTGGCAACCATCACGCGGGTTTTCCGCAGAATCCCTCAACGCCTTGTATTTACTATGCTCAATGGGTTTTC CGGCCGTTGGCATGGTTATTGAGAAGTCATAGCAACGACTGCCAACCGTCCGGCCTGACCAAACGAACCTCGAGGCGATTTACAGCCATGGGAATTGCAC
|
|
| DNA Sequence for Gene |
>PSPPH_0083
ATGATCATCGGTGAAAAACTTTATGTCGAAGCCCTCTTCGACAGCCATACCTGGACCATCAGCTACCTGGTGATGGACCTGGCTAGCAAGCAGTGCGCGC TGATCGACAGCGTGCTCGATTACGACCCCAAGTCGGGCCGCACCCGGACCGAGTCTGCCGACCGGATGATCGGCCGGGTACAGGCGCTGGGGGCTTCGGT GCAGTGGATTTTCGAAACCCATGTGCATGCTGATCACCTCACGGCTGCGCCGTACCTGAAACAGCAGCTTGGCGGACAAATCGTCATCGGCAGCCACATC ACCGCCGTGCAGGAAACCTTTGGCGCGCTGTTCAACGCGCCGTCTGACTTTGCCCGCAATGGCAGCCAGTTCGATGTGCTGCTGGAAGACAACGCCTCGT TTGCCCTTGGAACACTTCAGGTCAAGGCCATGCATACGCCCGGGCATACACCGGCGTGCATGAGTTACCTGGTGCAGGTTGGTGACGCCACGGTCGCGTT TGTGGGCGACACGCTGTTCATGCCCGATTACGGCACCGCCCGTTGCGACTTTCCCGGAGCCGATGCGCGCACCCTGTACCGCTCCATTCACAAACTGCTG GCGTTGCCGCCTGACACCCTGCTGTTCATGTGCCACGACTACCTGCCCAACGGTCGTGAGCTGAAATACATGACCACCGTCGCCGAACAGCGCGCCAGCA ACATCCATGTTCATGACGGTGTAGATGAAGACGCGTTCGTCAGCATGCGTGAAGCCCGTGACATGACGCTGGATATGCCTGTGCTGATGCTGCCTTCGGT GCAGGTCAACATGCGCTGCGGGCACTTTCCCGAGCCGGAAGACAACGGCGTCGTCTACCTGAAGATCCCGCTCAATGCTTTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGCTGCCCGCCTTGGGAAACTCTGTGATGAATGCTTCGATAACTACCTGTCAGATCCTGATCGTTGGTGGTGGTGCTGCCGGTATCGCCACCGCCGCAA GCCTGCTCGCCCGTGATGCTGCCCTGCAGATCACCCTGGTCGACCCTGCCGATACCCACTATTACCAGCCGGGCTGGACCATGGTCGGCGCGGGCATTTT CACGCCGCAGTCGACGGCACGCAGCATGGCGTCGCTGATTCCCAAAGGTGTGCAGTGGATCAAGGCTGCGGTGGCGACCTTCGAACCGCAGCACAATACC CTGACGCTCGCCGACGGGCGTACGCTTGGCTATCAGCAACTGGTGGCCTGCCCCGGCCTGAAGCTGGACTGGGCGGCCATCGACGGGTTGGTCGAGACGC TGGGTGCCAACGGCGTGACCTCCAACTATCGCTATGACCTGGCACCCTATACCTGGAAGCTGGTGCAGGGCTTGAAGCAAGGGCGCGCGCTGTTTACTCA
|
|
| Amino Acid Sequence |
>metallo-beta-lactamase
MIIGEKLYVEALFDSHTWTISYLVMDLASKQCALIDSVLDYDPKSGRTRTESADRMIGRVQALGASVQWIFETHVHADHLTAAPYLKQQLGGQIVIGSHI TAVQETFGALFNAPSDFARNGSQFDVLLEDNASFALGTLQVKAMHTPGHTPACMSYLVQVGDATVAFVGDTLFMPDYGTARCDFPGADARTLYRSIHKLL ALPPDTLLFMCHDYLPNGRELKYMTTVAEQRASNIHVHDGVDEDAFVSMREARDMTLDMPVLMLPSVQVNMRCGHFPEPEDNGVVYLKIPLNAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|