Strain | Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
ACCGACCAGCCATAGTCGGCCGGGTAAATGTCACTGGTCAGGCGCTCTTCGTAACCGTGCAGTTGATCCGGCCCACAGAAATGCATCTTGCCTGCCAGAG CGGTCTTGTAGCCCAGCGCACGCAGATAGTGAGCGTAGGTTGGAATATCAGCGGGGAAGTCGGCTGCGTTGTCGTACGCGCCGATCTTGCTTGGCAGCTG GCCGCTGACCAGTGTGAAACGCGATGGTGCGCACAGAGGGCTGTTGCAATACGCTGAATCGAACACCACGCCGTCGGCAGCAAGGCGGCTCAGATTCGGC ATCAGGATTGGAGACCGGGAGTAAAACGGCAACATTGGCGCGGCCATTTGATCGGCCATGATGAACAGAATATTTTTGCGCTTCATGTAATCGCTGCATC CCATTGTGAAAAGTTATGCGAAAGTGTTGGGTATGAGGATGAAGTCGTCGTGTTTGATGGTAAAGCCCATGCGCAGCAATGCCTAGGATAAGCACCGCTT
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DNA Sequence for Gene |
>PSPPH_0031
ATGTTTGAAGCTTTTGGCGACATGTCCCTCGACCTGCTGCGTGCCTTTGAAGTCGCGGCTCGCTTGCGCAGCTTCACTGCGGCGGCTATCGAACTGGGCA CTACTCAGCCTGCCGTCAGCCAGCAGATCAAGCGCCTTGAAGAACAGCTGGCCACCCGCCTGTTTGACCGGATCTATCGCGGCATCGAGCTTACCGAAGC CGGCGAAATATTGTTCAGCCATGTACAGGCTGGCCTGCAATCCATCGACAGCGGACTGATAGCGATCACCGAACAGCACCAGCACGAAGTGCTTCAAGTG GCGACCGACTTTGCCTTCGCCGCCTACTGGCTGATGCCGCGTCTGCACCGTTTCCACAAGGTCAACCCGGACGTGGATGTCAGCCTGGTCACCAGCGAGC GTACCCACAGCATGTTACGCGCAGATATCGACGTTGCCGTACTGTTCGGCGACGGACGCTTCAAGCAAGGCGAAAGCCATTGGCTGTTCAGCGAAGAAGT CTTTCCAGTGTGCAGCCCGCAACTGATCACGGGTCGCCAGACGCCGCTGCCCAACGAGGCACTGCGCGACTTTCCGCTCTTGCACCTGCGCGGCGAAAGC AGCAACAACTGGTTCGACTGGGCGGGCGTATTCCGCGCCCTCGACATCCCCCAGGCCCCTACCCCCGGCCAGCTGCGTTTCGACAACTACACCCTGCTCA TCCAGGCTGCGATTGGCGGACAAGGCATCGCCATCGGCTGGAAACACCTGGTCGACGACCTCCTCGACCAAGGCCTGCTCTGCCGCCCCATCGCCGGAGC CGCCATTTCCGGCCAGGGCTATTACGTGGTTTTGCCCCAGCGCAAACGGCGCGTGCAGATCGTCCAGCAGTTCATGGACTGGCTGGCGAGTGAGCAGGCG TTGAGCGGGGTTTCGCTGGCGGGCAGGCCGTTGCCGTCGATTGCGGTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCAGGCGTTCATTTTTTGGTCAGGAAGGACTCATACATGCAAGACACCCACGGCTACCACGCCCATATCTATTTCAACGCCCAGACCCTGGACCAGGCCC GAGCCCTGTGCGAAGCCGCGACCGAGAAATTTGCCGTGCAGATGGGCCGCGTTCACCAAAAGCTGGTTGGGCCGCATCCGGACTGGAGTTGCCAGTTGGC GTTCGGGCATGAGCAGTTGGCTGACGTCACTTTATGGCTCGCGCTTAATCGCGATGGATTGGTGGTTTTTCTGCATCCGTTGACGGGCGATGAGCTGCGC GACCATACCGACCATGCCATCTGGATGGGCGCGGTTCGGCCTTTGAATCTGGGCGCTCTAAGTGGCTGATAGCCAGCTTCTCGGCCGTTTTCATTCAGCA ATTACAAGCGCATTCCTCGTCGAAAAGATCGGTGTAAGATAGCTCCGCTGAAAAATGACCACTCGGTCCGTTGCAGCGCAAATTTCAACAAAACGGTCAT
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Amino Acid Sequence |
>LysR family transcriptional regulator
MFEAFGDMSLDLLRAFEVAARLRSFTAAAIELGTTQPAVSQQIKRLEEQLATRLFDRIYRGIELTEAGEILFSHVQAGLQSIDSGLIAITEQHQHEVLQV ATDFAFAAYWLMPRLHRFHKVNPDVDVSLVTSERTHSMLRADIDVAVLFGDGRFKQGESHWLFSEEVFPVCSPQLITGRQTPLPNEALRDFPLLHLRGES SNNWFDWAGVFRALDIPQAPTPGQLRFDNYTLLIQAAIGGQGIAIGWKHLVDDLLDQGLLCRPIAGAAISGQGYYVVLPQRKRRVQIVQQFMDWLASEQA LSGVSLAGRPLPSIAV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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