Pseudomonas syringae pv. tomato DC3000, PSPTO_5438
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTGGCCGAAACCGATGCCGAAGACTGGGGCTGGCTGGCCGTTTCGACGCATCCATCGCAGGTAGTGTTCGAGCACCTTCGCAGCCTGACCCAGGTAAAGA TGCCGGACGGAGCCGAGGTGTTTTTCCGGTTCTGGGATGGGCGGCATATTTATCCGATTCTGGAAGGGTTGGGTGAGGCGGCAGTGGAAGTGTTGCCGGT GTTTGATCGCTATCTGATCAATGGACGAGCGCTGAAAACCGGGTCAGGGGCATTGCCAGTGGTGAAAGACTGGCCTTGGTGGGAGGTGCCTCAACCTCTT TTGGATCAGTTGACGAAAAAAGATCCAGTAACGCTGATCGATAATTTGATGCAGTGGTTGACTGAAGAACGGCCGGATATCTATGTCGCCTTTCCAGAGT CCATATTGCGCCGCAAGATCGACCACTTTGTGCGCAGTACAGACGTTTCAACATCTCTCAACGAAGCACTGCTTAACCACCTGATTCTGGAGCAAGGCTG
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| DNA Sequence for Gene |
>PSPTO_5438
ATGGATCGCGTTGCCGATATCGAAGCACAACTGGACTCGTTCAAAGACAGCCTGACGCTGTACCGTGAACAAACCAAAACCTGGTATGCAGAGCTGGCCG ACAAAGGCAGCCGCGCGACAGACATGCCTTCACTGTTAGGCATGGAGCGCGTCATCAAAGCAGGGGGATCGAGTAAAGCGGTCAGCATGAATGACGACGA TTTCTCATACGTCGCCAAGTGCCCTCTCGTCGGCCCGCTTTTGATCGAGAGTAAGTTTGAGTCGCTGTATGACATTCCTGTCGGTGACATTCAGGTTGAT GTTATTGCCGTTGAAGGTGGCGCCAAGACCACCGTGATGCTGGACAAGCAAGGCAAAGGCAGCTTTCAGGGGCAACCGGGCAAAGCTTATAAAATTCATG TCCATGACAAAGTCACCCCCGCTCAAATTGATGCCCTGTTCAAATCCTATGACGGTCTGAGTGCTGACCTGGAAGGCTTCCTGCGCAAGGAGTGGGCAGG CTTCAAACCCCAGTGGTCCAATCAAAGCGCTTCGGCGACAGCAATGGCGATCGGCGCAGGCATTCTGGAGGGTGGCTGGGAAGCCATTAAAGGCGTGTGG GACGGCATCACCAAAGCGCTGGATATTTTGCAAAACCCTAAGAAATTTGCGGAGGAATTGGGCGCAGGTGCTGACGAACTGGTCAAACTGGCCAAAGAAG CGCCTGATGTCATGAAAAAAGCCATGTTGCTTGCCAGCGACGAGGCGGCCCTTTTCCTGATGGTTCGCTGCGCCTCGATATGGGTGGCCGGATTACCGCC GACCCAGGCTGCAGGCCAGACGGCGAAGATGACCTCGGCAGCCACTATCGGCATCCTGATCGACATTGTCATATCCGTCGTGTTGACCTTGGCAGCCGAG GGCGCAGGGCTGTTTTATCTGGCTGCACGCCTGGCCAAGTACGGCAAGATCATCCTCAACGCGGTCACCGGCTTTGTAAAAGCCGTGTTCAATATCATCA AAGGCTTCATGGGCTATGTGAGCAAATACGTCGCGGTAGCAGCTCGCGGCGCAGTATCAGCCACTAACCAAGGCGTCGCCCAACTACGTTTTGACGGCAA AAGAAACACCACAGTCAGAACCAGTAAACGTCTCGACGATGCAGCCAGCCAATCCAGGACACATGACGGTAAAAGTGCAGCGGCGGCGCAGGACACTTGT GTCAACGGTTGCCCGGTTTCAATGGTGACAGGGGAAGAGCTGCTCACCCTGACCGATGGGCAACTCGATGGCCTGCTGCCCTTTGAATGGACGCGACTGT ATCGCACCAGCGCGGTAGAAACTGACAGCCGTCTCGGTTATGGCTGGAGCCATGCGTTATCCCATCGTCTTCAACTTGACGATGAGGGAGTGCTATGGAT CGACAATGAAAACCGCCAGACCCGCTTCCCGATGCCGACCGAGCATCGCCCTGCTATCACCAATAGCTTGGCCAAAGCGGCGATCTATCTCGGCAATACG CCCGGCGAGCTGATCCTGACTCAAGCTGGCAAGCAACCACGCTTCTACCACTTTCGTGCCGGGCGCCTGATTACTATCAGCGACGCCTACGACAACCAGC TTCAAATCACTTACGACCTTGTAGATCGCGTGCAGCGGATCGACAACAACGCCGGGCGCTCTCTGCTTCTGCGTTATGAAGATCGCCATATCGTCGCAGT GGATTATCAGCAGCAACGGCCCGACTATACCGATCAGGGCGAACGGCAAGATCCTTGGGCGACCGTACAGACATTGGTGACCTACCAGTACAACGTGAAA GGTCAGCTTGTCAGCGCAACCACCGCGGCGGGCGAAAGCGAGCACTACCGTTACAACGAACAAAACGTGATCCAGGAGCGCCAGCTTGCTGGAGGCGCGA GCTTTTTCTGGGAATGGGAGAACGAAGGCAAGTCATCGCGAAGCATCCATCACTGGGCCAACTTTTCTCAGATGGACTCGCGTTACATATGGGACGACGC AGGCCAGGTCACTGTTCTCAATGCCGATGGCAGTGAACAGGTTTATGTACACGACGAAAATGCGCGCCTCATCAGTGAAACCACCCCTGATGGAGCTGAA ACGCAAAAAGCTTATGACGAGAAAGGCCGACTGATCGCGGAGAAAGACCCGCTGGGTGCGATCACTGAATACCGCTATGACGAAGACGGACTGCTGATCG CGTTGATTCCACCGGAAGACGAACCGGTAGCCTACGAATACCATCGCGGCTTCGTCAGTGATGTTCGTCGGGGTAAAGCAACTTGGAAATATCAGCGTAA TGAACAAGGCGACATTACCGTCCAGACCGACCCGGACGGCAACGAAACCCATTACAGCTATGACCTGCGCGGCCGCTTGCTGGAGATCCGTCACCCCGAC GGCAGCCGTCATCAACTGGGCTGGAACGGCCTAGGCCAATTGCTCGAAGAGCGTCTGCCTGATGGTGGTCAGCGTAAATACCGTTACGACGCCCTGGGTC GGCAGATCACCCGTCAGGAAGAAACCGGCGCCATCACCCATTACCAATGGGACGCAGCCAACCGCCTGGCACAAGCCACTCTGCCCGGCGGCGCCACGCG TGCTTTCTCCTACAACGCCTACGGCAAAGTCACCGCCGAGCGCGACGAACTGGGCCGCATCACCCGCTACGAATACGCCGACAACCTGCATCTGGTCAGC CGCCGTATCAACCCGGACGGCAGCCAGCTGCGTTATCGTTACGACAACGCGCGCCTGCTGCTCACCGAGATCGAAAACGAGCGCGGCGAGCACTACCACC TCGACTACTACAGCAACGGCCTGATCCAGCGAGAAACCGGTTTCGACGGCCGCAGCACCGCCTACGAGTACGACCTCAACGGCCAGTTACTGAAGAAAAC CGAATTCGGCGACGACGGCAGCGAGTTGTCCACTGAATACCAACGTGATGCCGCTGGCCGTCTGCTGGTGAAAACCCTGGCCGATGGCAGCGCGATCCAT TACCGCTACGACGCCCTCGGGCGTCTGGTCAGCGTCGACGACGGCCACTGGCCGCTGGCTTACGAATACGACTTGCAGGACCGCCTGATCACCGAGCATC AGGGCTGGGGCACGCTGCGTTACGAGTACGACACTGTCGGCCAACTGAAACACTGCCGCCTGCCTGACGGCAGTAAGCTCGATTACCACCATCAGCGTGG TGGCCAGCTCGGCAGCATCGACCTCAACGGCTCGCGCCTGACCACCCACCAGTTCAGCGCCGGCCGCGAACAGCAACGCCAGCAAGGTTTGTTGCTAAGT CAGTATCAGTACGACGAACAAGGCCGACTGCAAGCACACAGCGTCAGCCAACAGGATCGCCACCTGTTCCACCGCCACTACGCGTACGACGCAAACGGCA ATCTGGCAGGCGTCAACGACAGCCGAAAAGGCAACCGTAGCTATCATTACGATCCGCTCGACCGCCTGATCAACGTGCGTGGCACCACCCCGGAAAGCTT CGCCCATGATCCCGCAGGCAACCTCCTCGGCCAAGGCGATCAACCGGCTGCCAACCTGGCCAACGTCAAAGGCAACCGCCTGCTGATGCAGGGCGACCGC CATTACGATTACGACGCCTACGGCAACCAGATCCGCGAACGCCGCGGCACCGGACAAAAGCTCGTCACCGAGTACCGCTACGACTGCCAGCACCGCCTGA TCGGCGTCAGCCTGCCGGGCGGAAGCGTGGCTTCGTACAAATACGACGCCTTTGGCCGGCGCATCGAAAAGACCATCGATGGCCACATCACCGAATTTCT CTGGCAAGGCGAACGCCTGATCGCCGAAAGCGCCGACAACCGTTACCGCAGCTACATCTACGAGCCGGGCACCTTCCGACCGCTGGCGATGCTGGACGGC GAAGGCCCTCTGAAAGCCGCACCGTTCTATTACCAGCTTGACCACCTCGGCACGCCGCAAGAACTCACTGACTACAGCGGCGAGATCATGTGGTCGGCCA AATACCGGGCTTACGGCAACCTCGCCACCCTCGACATCGCCGAAATCGAAAACCCGCTGCGCTTCCAGGGTCAGTACTTCGATGCGGAAACGGGCTTACA TTACAACCGGCATCGCTATTACAATCCGGGCACTGGACGGTTTTTGACCCCGGACCCGATCAAGCTGGCGGGTGGGTTGAACAACTACCAGTATGTGCCT AACCCGACGGGGTGGGTGGATCCGTTGGGGTTGAGTGGAGAATGTCCAGATTCAGAAAAAAACAAAATCCCAGTTGAGGAAGCATCCAGTCCATCCAACT CTTACGACAACTCGGAAGAGCTCAGACCGCCTGAATCAAATGGCAGAAGATATGCAGCTGGTAAACATTATGTAAATCCCCAGGACATAAATTTTTCACA GCGCGGCGTACACGGCAATGAATATGAAGCAAAAATGTCACAAGGTGATTGGGATTGGTCCCGACCAGGTTCCGCTCTTAACGTAATGGAGGTTGACGGT CAACTTGTGTCTTATGACAACCGAAGGCTAAGAGCCGCTAGATCTGTCGGCTTAAACTCAATACCTATACAAATTGTACTGGCCGAAGATATAATGCCAG GTTCGAAAAAAACTTGGGAGAAAGCTTTTAAACTCAGAAGAGAAGATAGACGAAATCTTCTAGATGGTGAGCCTGTACCTCCAAAAGGACTAAACACACT ACCTAAAATTAATGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCATAAAATGTTTTCAGACGAAATAAAAATTATACAAGAGCAGTGGTTAGAAGAAATATATCCGCGCACAGACTCGATAACTTCAGGGAATGGTTTTTT TTGTCTTTTCGATCTAGCTAAAGATGATATATCATTAAAAAATAAAATATGGATTCCCGCATCAGATTATTATTCTCTTGACAGCAATGCAAGTGAGGGC CTATCAACCATTAGCAAAATAGAAGGCTTTGATGATAGCATTGTACAATGTGGCGAATGCTTCGCAGCCGGGGAGGATGGCTTCATCGCATTAACAAGAA AGCACACGGAAGAATTAGTATGGCTAGTTGTTTTAAGCAAAACAAATCCATTTGAGAACTTAAAAGTTGAAGGAGCGGAGATTCATGCTTATTCATCCAA CGGAGTTACTGTACAAATACCAATGGAACGTCCAGACAAGCTAATCATACACTGGCGATAGATGTAACAGACCAACATCAATAATCTTCGAAAAAACCAC
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| Amino Acid Sequence |
>Rhs family protein
MDRVADIEAQLDSFKDSLTLYREQTKTWYAELADKGSRATDMPSLLGMERVIKAGGSSKAVSMNDDDFSYVAKCPLVGPLLIESKFESLYDIPVGDIQVD VIAVEGGAKTTVMLDKQGKGSFQGQPGKAYKIHVHDKVTPAQIDALFKSYDGLSADLEGFLRKEWAGFKPQWSNQSASATAMAIGAGILEGGWEAIKGVW DGITKALDILQNPKKFAEELGAGADELVKLAKEAPDVMKKAMLLASDEAALFLMVRCASIWVAGLPPTQAAGQTAKMTSAATIGILIDIVISVVLTLAAE GAGLFYLAARLAKYGKIILNAVTGFVKAVFNIIKGFMGYVSKYVAVAARGAVSATNQGVAQLRFDGKRNTTVRTSKRLDDAASQSRTHDGKSAAAAQDTC VNGCPVSMVTGEELLTLTDGQLDGLLPFEWTRLYRTSAVETDSRLGYGWSHALSHRLQLDDEGVLWIDNENRQTRFPMPTEHRPAITNSLAKAAIYLGNT PGELILTQAGKQPRFYHFRAGRLITISDAYDNQLQITYDLVDRVQRIDNNAGRSLLLRYEDRHIVAVDYQQQRPDYTDQGERQDPWATVQTLVTYQYNVK GQLVSATTAAGESEHYRYNEQNVIQERQLAGGASFFWEWENEGKSSRSIHHWANFSQMDSRYIWDDAGQVTVLNADGSEQVYVHDENARLISETTPDGAE TQKAYDEKGRLIAEKDPLGAITEYRYDEDGLLIALIPPEDEPVAYEYHRGFVSDVRRGKATWKYQRNEQGDITVQTDPDGNETHYSYDLRGRLLEIRHPD GSRHQLGWNGLGQLLEERLPDGGQRKYRYDALGRQITRQEETGAITHYQWDAANRLAQATLPGGATRAFSYNAYGKVTAERDELGRITRYEYADNLHLVS RRINPDGSQLRYRYDNARLLLTEIENERGEHYHLDYYSNGLIQRETGFDGRSTAYEYDLNGQLLKKTEFGDDGSELSTEYQRDAAGRLLVKTLADGSAIH YRYDALGRLVSVDDGHWPLAYEYDLQDRLITEHQGWGTLRYEYDTVGQLKHCRLPDGSKLDYHHQRGGQLGSIDLNGSRLTTHQFSAGREQQRQQGLLLS QYQYDEQGRLQAHSVSQQDRHLFHRHYAYDANGNLAGVNDSRKGNRSYHYDPLDRLINVRGTTPESFAHDPAGNLLGQGDQPAANLANVKGNRLLMQGDR HYDYDAYGNQIRERRGTGQKLVTEYRYDCQHRLIGVSLPGGSVASYKYDAFGRRIEKTIDGHITEFLWQGERLIAESADNRYRSYIYEPGTFRPLAMLDG EGPLKAAPFYYQLDHLGTPQELTDYSGEIMWSAKYRAYGNLATLDIAEIENPLRFQGQYFDAETGLHYNRHRYYNPGTGRFLTPDPIKLAGGLNNYQYVP NPTGWVDPLGLSGECPDSEKNKIPVEEASSPSNSYDNSEELRPPESNGRRYAAGKHYVNPQDINFSQRGVHGNEYEAKMSQGDWDWSRPGSALNVMEVDG QLVSYDNRRLRAARSVGLNSIPIQIVLAEDIMPGSKKTWEKAFKLRREDRRNLLDGEPVPPKGLNTLPKINE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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