Pseudomonas syringae pv. tomato DC3000, PSPTO_5435 (hcp-2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Sequence Data

Strain Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
TGAAAACCTCAGCAGGACGCATACGCTCAAAACCGCTCAAAGAAAAAAGATCACGTCTAAGAAAGCGATTAAAATTGATACAAATTCAAGCTTCCATAAT GACAAAATCTCTTTACCGACACATCAAAAACGATGTAGGAGATGTCTGAAATTTATCTGGCTGAGTATTTCGCAGCAATAAGACATGCGTCGGCACAACG CCACCATGCGCAGAAAGCTGCGCACCAAAACTGTTAGTAACCTGTGGATATATCGCCACAGACCTTAGTTAACGAGGGGCACAGCCAAGTGCGCAAGAAG TTGCGCAACAGTGCGCAACTTCTTGCGCAAACCAAAAGCTTTTTTACAACGTAAGGGGATCAAGTCGCCGCGACTGCGGGCGTAGCCAGTTGATTTACAT GATTTTTTTGTAACATGGCATGATGATTGGAAGATGAGCTGAACCCAATGAGCGATTTCGCCTCCCGGGCAACTACATCTATCCAGCAAGGAGCACCTCC
DNA Sequence for Gene
>PSPTO_5435 |hcp-2
ATGGCTACGCCAGCGTACATGTCCATCACCGGCACCAAACAAGGCCTGATCACCGCCGGTGCCTTCACTGCTGACTCGGTCGGCAACACCTACCAGGAAG GTCACGAAGACCAAGTGATGGTTCAGGGCTTCAGCCACGAACTCATCATCCCGCGTGACCCGCAGTCGGGCCAACCTACCGGTCAGCGCGTCCACAAGCC GGTCAAGATCACCAAAGTGTTCGACAAGTCCTCGCCTCTGCTGCTGGCAGCACTGACCTCTGGCGAGCGTCTGACCGAAATCACCATCCAGTGGTACCGC ACCTCGGCTGCCGGCACTCAAGAGCACTACTACACCACCAAGCTTGAAGACGCGATCATCGTTGACATCAAGGACTACATGCACAATTGCCAAGACCCGG CGAACGCGCATTTCACCCATTTGGAAGACGTAGAATTCACCTACCGCAAAATCACTTGGACCCACGAAGTATCCGGTACTTCGGGTTCCGATGACTGGCG TTCCCCGGTCGCTGGCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCTGGCCGACCGTTTCAAGCATCGGCCAGCTCTGCTGGTCGATGTTGTTTACGCACCTCCAGAATTTTGCGTGTGTCGGGCTGCTTGTTGAGCCTGGAC GCGCGCCGCAACACTGCACGAGGAACAAGGGATGTTCGCGCCGGCCAATCAGACTCACTTTTCCCTGACCATAGAAGGTCTTTCCAATGATCTGCAGGTT CTTGCCTTGCAAGGTCGGGAAGCCATCAGCCAGCCTTTTGCGTTTGAGGTCGATCTGGTCAGTGAGCAGCCATCCCTGGACCTCGAAACGCTGCTACATA AACCGGCCTTTCTGCAGCTCTCGCCTGACGGCAGCGGCATTCATGGCCAGATTTACCGCGCCTCACAGGGCGACTCGGGCAAGCGGCTAACCCGCTACGC CGTGACCTTACGCCCGCAACTGGCCTACCTTGCCCACCGTACCAACCAGCGTATCTTCCAGAACCTCACCGTCCCGAAAATCATCGGTATTGTTCTCGAA
Amino Acid Sequence
>secreted protein Hcp
MATPAYMSITGTKQGLITAGAFTADSVGNTYQEGHEDQVMVQGFSHELIIPRDPQSGQPTGQRVHKPVKITKVFDKSSPLLLAALTSGERLTEITIQWYR TSAAGTQEHYYTTKLEDAIIVDIKDYMHNCQDPANAHFTHLEDVEFTYRKITWTHEVSGTSGSDDWRSPVAG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site