Pseudomonas syringae pv. tomato DC3000, PSPTO_5420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCTCGCCGCTCGACTGCTTTCTTTAACATGCTGGCTGCGCTCACCGCCTTGTTGGTGCTGGCCGGCTGCTCTACGTTGTCGCCGTACTCAAACGTCACCA AGCTCAACCTGAAACTGACCGCCAGCGACCAGGTGAACCCGGACCTCAACGGTCGCCCGTCCCCCGTTGTTGTGCGCCTGTTCGAGCTCAAGCACCCGGT AGCGTTCGAAAATGCAGATTTCTTCAGCTTGTATGAGCGCGCAAAAGAATCTCTGGCCCCGGACATGGTTGCGTCTGAAGAGCTGGAGCTGCGTCCGGGT GAAACCGTCGAGCTCAAGCTCAGCCTGCAAGAAGGCAGTCGTTACGTCGGCGTTCTTGCAGCCTATCGGGACCTGCCGGACAGCAGATGGCGCTACACGC TGCAGGTAACACCGGTAGGTATCACTGACGCTGACCTGACTCTTGATCAGAACGGCATTCGTAACACCCATGAACCGCTCGCCAAGGCAGATGACTGACC
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| DNA Sequence for Gene |
>PSPTO_5420
ATGAAATCCCATAAAGTCATTTGGCAGGAAGGCATGTTGCTGCGCCCGCAGCACTTCCAGCACAACGATCGCTACTACGATCACCAGATGAAAACCCGTA CCCAGTTATTGGGGAGCTACACGTGGGGTTTTCTGAGTCTGGACATCGACCTGCAGTTTCTCAATATGGGCAAACTGGTGATCAGCCATGCGTCGGGAAT CCTGCCGGATGGCAGCCTGTTCGAGTTGGGGGGCAACACTGAGCCGCTGGCGCTCGATGTGCCGCCCAATACGGGTAATACTCCGATCTATCTCGCGCTG CCGCTGGTCACGGGTAACCACATTGAGTCGCGCCGCCCCGAGCAATCTGATGTGCTGGCGCGCTATACCGCCTACGAGGCTGAGGTGTCCGACTCCAACG CTGGCGATGACTCCTCGAGTCAGGTCAGTTGTGGTCGTCCCGACTTCAAGCTGTTGCTTGGCCAGCAGCAAAGCGATCAGGCTTACGTGAAGCTGAAGGT TTGCGAAGTACTCGACACGACGCCGGATGGCGTAATCAGCCTTGATCCCGATTTTGTACCGACCTACATACAGGCTCACGCTTCCAGCTACCTGCTGTCT TGCCTCAAGGAAGTCATCAGCATGCTCAGCCACCGGGGCGACACCATCGCTGACCGGATCCGTTCCAACGGCAAGGTAGGGGGTGCCGAAGTCGGCGACT TCATGATGCTGCAACTGATCAACCGTACCGAGTTGCTGCTGCGTCACTATCTGGACCTTGAACAGGTGCACCCTGAAGAGTTGTATCGCACGCTGCTGAC CATGCTTGGCGATCTGGCGACGTTTTCGAGCGATAGCAAGAGACCGCGTCTGGACAGCCGCTACCAGCACAGCGATCAGGGAGCCAGCTTCCGCAAGCTG ATGGAGGCGATCCGTCAGGTGCTGTCGATGGTGCTGGAACAGCACGCCATCGAACTGGTTCTACAGGCGCGTCAGTACGGCATCATCGTATCGCCTCTGC ATGATCACAAGCTGTTGGGATCGGCGTCGTTCGTTCTGGCAGCCAGCGCAAATTGCGACTCCGAGGAACTGCGTCACCGTTTGCCAGCGCACCTCAAGGT CGGTCCTGTGGAGCGTATCCGCCAACTGGTCAACCTTCATCTGCCTGGTATCAAGGTCAAGCCATTACCGGTGGCCCCGCGGCAGATTGCGTTCCATACC AACAAAACCTATTTCATCCTCGAACTCAGTTCCGAAGATCTGGCGCAACTCGAGCGCTCCGGCGGCTTCGCGTTCCATGTGTCCGGCGAATTCGCCGAGC TTGAACTGAAATTCTGGGCTATCAGGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACATGAGCAAGGATACGAATTACAGTCAGGACGATAAAACCGTCCTGCTCGACCGCCAGGGCCACGGCCCGGCGGCGAGCCCGCTGACGGACTTCGC TGCTCCGCCAAGGTTCGAGCAACTGGAAGAGCGCATGATTTACGCGGCACGCCTGCGCCCGGCCGAGGCCTTCAACATCAGCCTCAATGCGCTGGTCGCG GCTGGCTCCGACCTTCTTTCAGAAGTGGTACGCCTCAAGCACAGCGACACACGTGAAGACATGTATGCGCTCAACGAGCATCTGACTGCCGGGCTAAAGC TGTTTGAAGTCCGCGCGCTGCACAACGGTGCCGAAAGCAGCCAGGTGATGGCGGCTCGTTACGTGCTGTGCACGGTCGTGGACGAGGCGGTTGTGACCAC GCCGTGGGGCAACGAAAGCGAGTGGTCGCAGATGAGCTTGCTCAGCAGCTTCCACAACGAAACATTTGGTGGTGAGAAGTTCTTCCAATTGCTCGATCGG
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| Amino Acid Sequence |
>hypothetical protein
MKSHKVIWQEGMLLRPQHFQHNDRYYDHQMKTRTQLLGSYTWGFLSLDIDLQFLNMGKLVISHASGILPDGSLFELGGNTEPLALDVPPNTGNTPIYLAL PLVTGNHIESRRPEQSDVLARYTAYEAEVSDSNAGDDSSSQVSCGRPDFKLLLGQQQSDQAYVKLKVCEVLDTTPDGVISLDPDFVPTYIQAHASSYLLS CLKEVISMLSHRGDTIADRIRSNGKVGGAEVGDFMMLQLINRTELLLRHYLDLEQVHPEELYRTLLTMLGDLATFSSDSKRPRLDSRYQHSDQGASFRKL MEAIRQVLSMVLEQHAIELVLQARQYGIIVSPLHDHKLLGSASFVLAASANCDSEELRHRLPAHLKVGPVERIRQLVNLHLPGIKVKPLPVAPRQIAFHT NKTYFILELSSEDLAQLERSGGFAFHVSGEFAELELKFWAIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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