Pseudomonas syringae pv. tomato DC3000, PSPTO_5416
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCTCAACCGCCGTCTGGGTCAGGAACTGACGGTCACTGCGGGTCGCCATGACAGCATCATGGGCAGCACGGTGGTAGCGCTGATGGTTGAGGGTAATC GCGCCGCCTGTATCTGGGCGGGCGATAGCCGTTGTTACTTGTGGCGCGGACAGCGTCTGTACCAGCTGTCCAAAGACCACTCGCTGCAACAGCAATTGAT CGACGAGGAGAAAATGAGCGTCGAACAGGCCAGTGCCCATCCTTCCGCGCACGCCTTGACGCGCGCGGTCGGTGCGGCAGAACAGTTGACCCTGGATGTA CTGGAGCTTGAGGTATATCCCGGCGACGCATTTTTGCTGTGTAGCGATGGTTTGTATCAGGGACTTGGCAGCGATGCGCTCGGTAGCGCCTTGAGTCTGA CCGCGCCGCAGGTAGCGCTGGAGCGCTTGTTCGATAGTGCCTTGCGTGGTTCGGCGCGGGATAATCTGACGGCCGTGGTGATCCGCAAATGACTGAGCTC
|
|
| DNA Sequence for Gene |
>PSPTO_5416
GTGCGCCCGAACGACGACCTGCTGGTGAACGAAGAGCAGGACAGCAACCTGACCTACTTTGCGTTTGCCAAGTCACACAAGGCAGAAGCTGCACTGGCGC CGACCAAGGCCAGTATTGGTGAGATGCCCGACGTGTTGGCAGGTCGTTACCGTATCGAGCGACTGCTCGGCGCCGGTGGCATGGGCGCTGTCTACCGGGC CAAGGATTTGCTGAGCGAACAGTTCGGCGAGCCCGATCCTTATGTGGCGCTGAAAATCCTCAGCGAAGAATTTGCCGAGTCGCCGGACGCAAGCGCCTTG CTTTACAGCGAGTTCGCCCTGACCCGACGCCTTCGTCACAATAACGTGCTGCGTTTGCACTCGTTCGAAGTGGACACTAACTGCCAGCGGGCTTTCATCA CCATGGAACTCATGCGTGGGCTGACTTTGGACAAACTGCTATGCGAACGGCCTTTGGGCCTGCCGTGGAGAGAACTGCGTGACATTGCATTGTCGTTGCT CGACGCACTGGCTTATTCACATGCTCGCGGCGTGTTGCATGGCGACATGAAACCCAGCAATGTCATGCTCAGCGAAGAAGGTGTGCGCCTGTTCGACTTT GGCCTTGGCCAGGCCGAGGAAGGCGTAATGCCGGGGCTGCCTCACTTGAGTCGCGAACGTTTCAACGCTTGGACTCCGGGCTACGCAGCCCCGGAATTGC TGGAAGGCCAGGCACTATCAGCCAGCGCCGATGTGTATGGCGTTGCCTGTGTAATTTTTGAACTGGCAGGAGGCAAGCACCCGTTTCGCCGCTTGCCGTC GACCCAGGCGCGTGACGAGCGTCTTGAGCGTGAGCTGAAGGCACCAAGGAATTTACCGAAACACTGCTGGCCTGCTTTGCGGTCAGCACTGAGATTCGAT GCACAGGATCGCAAGATCACTGCCAAACAACTGCGTGACGCTTTCGCCGTCACTTCGTCCAGGCTGCAACGCTTGATGCCGTGGTGTAACGGATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAACCGAACAGGGAGCAAACAATGTTCAATCCTTCTAACGAAACGCACTTCAGTCTGACCGTCAAAGATTTTTCAGGCGACCTGCAAGTGTTGTCGTTTA CAGGTACTGAAGGCATCAGCCAACCGTTCAGTTTCGACCTGGAGCTGGTCAGCGAAAACCCCGACATCGATCTGGAGACGCTTTTGCACAAGCAGGCGTT TCTGGCGTTCGATCCCCAGGGGAATGGCATCCACGGGCAGATCTACCGCGTTGCCCAAGGCGACGCTGGCAAGCGCCTGACGCGTTACACCCTGTCTTTG GTACCGCAGTTGCAGTACCTGCATCATCGTACCAACCAGCGTATCTATCAGCAGATGTCGGCGCAGCAAATCATCGCGCTGATCCTGGAAGAGCATGGCA TCAAGAGTAACGGCTACAGCTTTCAGCTCGGCCAGCCATGCCCGGCGCGCGATTACTGCGTGCAATACGATGAAACCGATCTGCACTTCGTCCAGAGGCT
|
|
| Amino Acid Sequence |
>serine/threonine protein kinase
MRPNDDLLVNEEQDSNLTYFAFAKSHKAEAALAPTKASIGEMPDVLAGRYRIERLLGAGGMGAVYRAKDLLSEQFGEPDPYVALKILSEEFAESPDASAL LYSEFALTRRLRHNNVLRLHSFEVDTNCQRAFITMELMRGLTLDKLLCERPLGLPWRELRDIALSLLDALAYSHARGVLHGDMKPSNVMLSEEGVRLFDF GLGQAEEGVMPGLPHLSRERFNAWTPGYAAPELLEGQALSASADVYGVACVIFELAGGKHPFRRLPSTQARDERLERELKAPRNLPKHCWPALRSALRFD AQDRKITAKQLRDAFAVTSSRLQRLMPWCNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|