Pseudomonas syringae pv. tomato DC3000, PSPTO_5360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTCTGGGTGCTGCTGATCTACTTCGGCACCGTCAACGGCATGCGCGCTTTGGGCGAACTGCTCGGTATTCCCAACCTGGCCCTGAGCGCCTTCGCCG CCGGGGTTATCGCCTTGGGGCTGTGCTTTGGCGCGTACGCCACCGAGGTGTTTCGCGGCGCAATTCTCGCCATTCCCAAAGGCCATCGCGAAGCCGGACT GGCGCTGGGCATGTCGCGGTCGCGCATCCTGTTCAAACTGGTGCTGCCGCAGATGTGGCGCATCGCCCTGCCCGGCCTGGGCAACCTGTTCATGATTTTG ATGAAAGACACCGCGCTGGTCTCGGTGATCGGCCTGGAAGAAATCATGCGCCACGCGCAGATCGCCGTGGGCTTCACCAAAGAGGCGTTCACGTTCTACA TGGTCGCGGCCATCATGTACCTGGGCCTGACCGTGCTGGCCATGATCGGCATGTATTTCCTTGAAAAACATGCCGGCCGCGGCTTTCTGAGGAGCGCGTC
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| DNA Sequence for Gene |
>PSPTO_5360
ATGAACTGGGAAGTCATCATCAAATGGTTGCCGCGACTGGCGCAGGGCGCGACCCTGACCCTGGAGCTGGTGGCCATTGCCGTCATCGCCGGTCTCATCC TCGCCATCCCGATGGGCATCGCTCGCGCGTCGCGGCACTGGCCAGTGCGCGCCCTGCCTTACGCCTACATCTTTTTCTTCCGTGGCACGCCGCTGCTGGT GCAGTTGTTTCTGGTCTATTACGGCCTGGCGCAGTTCGATGCCGTGCGTCAGGGGCCGCTGTGGCCGTACCTGCGCGACCCGTTCTGGTGTGCGGTTGTT ACCATGACCCTGCACACCGCCGCCTATATCGCGGAAATCCTGCGCGGCGCAATTCAGGCCGTGCCGGTCGGTGAAGTCGAGGCTGCGCGGGCGCTGGGCA TGTCGAAATGGAAAGCGCTGTTCTACATCGTCCTGCCGCGCGCCGCGCGCATCGGCCTGCCCGCCTACAGCAACGAAGTGATCCTGATGCTCAAGGCCAG CGCGCTGGCCAGCACCGTCACCCTGCTGGAACTGACCGGCATGGCGCGTACGATCATCGCCCGCACTTACTTGCCGGTGGAGATCTTCTTCGCCGCCGGC ATGTTCTACCTGGTGATGACATTCGTGCTGGTGCAAGGCTTCCGCCTGCTGGAAAAGCTGCTGCGTGTAGACGCAAGTCAGGGGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TATGAAGGGTGCTGGCGTCGATCCAGTCAGCACCCAGTCAACCGAGGCCGTCGATATGCCCTCTGAACCCTGCTTGCAGGACGCACACCTCGGCAGCCAC TTTCGTGCACTGGACAGCTTTCTGTTCGCGCATCAGGCCTTGTGGCGGCCCAAGCCGTTCACCCACCTGCACCTGCCATGGGAAGACACATACCCGCAGC TGTCGCACTGGCTGCGGCACCGCACGCTGGCGCAGGCCGAAGCGGCGCACAATCACCCGCAACACCTCGACGCGCCCTTCCCCTTTACACAGCTGGCTGC CGAAGCGGTAGCGCTAAGCCACGTTGCCGAACTGCCCGCCTTCCCTCTGGCGCCCGTCAATGCGCGCATGAACGTCGATGTGCCAGGGCGTAAATGGCAG CAGATCGAAGCCTTTGCGGCTCATCTGGACATGCGCGACAGCACCACTCACTGGCTGGACTGGTGCGCAGGCAAAGGCCATCTGGGCCGTCGGCTGACGG
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| Amino Acid Sequence |
>amino acid ABC transporter permease
MNWEVIIKWLPRLAQGATLTLELVAIAVIAGLILAIPMGIARASRHWPVRALPYAYIFFFRGTPLLVQLFLVYYGLAQFDAVRQGPLWPYLRDPFWCAVV TMTLHTAAYIAEILRGAIQAVPVGEVEAARALGMSKWKALFYIVLPRAARIGLPAYSNEVILMLKASALASTVTLLELTGMARTIIARTYLPVEIFFAAG MFYLVMTFVLVQGFRLLEKLLRVDASQGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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