Pseudomonas syringae pv. tomato DC3000, PSPTO_5276

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_5276
NCBI Old Locus TagPSPTO5276
Name
Synonym: PSPTO5276
Replicon chromosome
Genomic location 5999980 - 6001356 (+ strand)

Cross-References

RefSeq NP_795007.1
GI 28872388
Entrez 1186961
INSDC AAO58702.1
NCBI Locus Tag PSPTO_5276
NCBI Old Locus Tag PSPTO5276
UniParc UPI000000960A
UniProtKB Acc Q87UM0
UniProtKB ID Q87UM0_PSESM
UniRef100 UniRef100_Q87UM0
UniRef50 UniRef50_B2GIW1
UniRef90 UniRef90_S3MLV8

Product

Feature Type CDS
Coding Frame 1
Product Name
proline-specific permease proY
Synonyms
Evidence for Translation
Charge (pH 7) 7.09
Kyte-Doolittle Hydrophobicity Value 0.878
Molecular Weight (kDa) 49.3
Isoelectric Point (pI) 9.37

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 424 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000219 (3043 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_5276

Human Homologs

Ensembl 110, assembly GRCh38.p14
solute carrier family 7 member 1 [Source:HGNC Symbol;Acc:HGNC:11057]
E-value: 5.7e-10
Percent Identity: 24.8

References

No references are associated with this feature.