Pseudomonas syringae pv. tomato DC3000, PSPTO_5145 (phaC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCGACCACAATCTGGCAGCCAATCACGCTGCCAAAGTGCGCTCGTCCGGCAAGCTGGGCTATTACTGGCAGCTGTTTGCCGGCATGGGCTGGACCAGCAT TCACTGGCTGCACAAGATTCACCAGCCAACGCTGGTGCTGGCCGGCGATGACGATCCGCTGATCCCGCTGGTCAATATGCGCCTGCTGGCCTGGCGAATA CCCAATGCCCAGCTACACATAATCGATGACGGGCATTTGTTTCTGATTACCCGCGCCGAAGCCGTCGCGCCGATCATCATGGGGTTTCTGCAGCAGGAAC GACAACGCGCGGTCATGCACCCGCAGCCCACGCCAACCCGAACGCGCTGACAGCGCCAGCAGGCCCGCGACGCCGAACAAAACAGTTTCAACCATTGCGC ACTACATAGGAGCTTTTGAGCGCGCAAAACGACGCAAGCCCTTCGCAACAGAAGGGCTCGCGCCAACCCATGAGTTGCCTGACGACGGAGTGTTGCCCTC
|
|
| DNA Sequence for Gene |
>PSPTO_5145
|phaC
ATGCAAGAAAAACCAGCGAAAGCTGCCGCGATCGCGCCCGCGCCTGCGAACTTTATCAACGCGCAAAGCGCCATAGCCGGCGTGCGCGGACGAGACCTGC TTTCGACCCTGCGTAATGTGGCTGCGCAAGGCTGGCGGCATCCGATTCGCAGCGCCCGCCACGCTCTGGCACTGGGCAGCCAGCTGGGGCGCGTGGTGCT GCTGGGCGAAACCCTTTATCCGCACAACCCAAAGGACAGCCGCTTCGCCGACCCGACCTGGAGCCTGAACCCGCTTTATCGCCGGGGGCTGCAGGTTTAT CTCAGTTGCCAGCATCAAGTCAGGCAGTGGATCGATGACTGCGACCTGTCCACAGAGGACCGGGCCCGCGCGCATTTTCTGTTCACGCTGATCAACGACG CGCTGGCCCCGTCCAATACCTTGCTCAACCCGCAAGCCATCAAAGAGCTGTTCAACTCCGGCGGGGCCAGCCTGCTCAAAGGCCTGAGCCACATGGCCGA TGACCTGTTGCACAACAACGGCCTGCCCAGCCAGACCACCAAGGACGCTTTCGAGGTAGGACGGACCGTGGCGGCCACACCCGGCGCGGTGGTGTTCCGT AACGAAATGTTCGAATTGATCCAGTACCGGCCGATGAGCGAAAAGCAGTTCAGCCGACCGGTGCTGATCGTGCCGCCGCAGATCAACAAGTACTACATTT TCGACCTCAGCCCGGCCAACAGCTTTGTGCAATACGCCCTCAAGAACGGTCTGTCGACGTTCATCATCAGTTGGCGCAACCCGGATATCCGTCATCGCGA ATGGGGGCTGTCCAGTTATGTCGAGGCGGCCGAGCAGGCGATGAATATCTGCCGGGCGATCAGCGGCGCGCGTGAGGTCAATCTGGTGGGCGCTTGCGCA GGCGGTCTGACCATCGCCGCGCTGTTGGGCCACTTGCAGGTCAAACGCCAGACACGCCGTGTTGCCAGCGCGACCTACATGGTCAGCCTGCTGGACAGCC AGATCGATAGCCCTGCCACGCTGTTCATTGATGAGCAGGCACTGGAAGCCGCCAAGCGCCGCTCCTACCAGCGAGGCGTACTGGAAGGCAGCGAGATGAG CCGGGTGTTTTCCTGGATGCGCCCCAATGACCTGATCTGGACGTACTGGATCAACAATTACCTGCTGGGCAAATCGCCGCCGCCGTTCGACATTCTGTAC TGGAACAACGACACCACGCGCCTCCCCGCCGCGTTGCACGGTGACCTGCTGGACTTCTTCAAGCACAACCCGCTCAGTCATGCCGGTGGGCTGGAAGTCT GCGGTACGCCAATCGACCTGCAGAAAGTCACGGTCGACAGCTTCAGCGTCGCCGGCATCAACGATCACATCACGCCATGGGACTCGGTGTACCGCTCGAC CCTGCTGCTGGGCGGCGACCGGCGTTTCGTGCTGGCCAACAGCGGCCATGTGCAGAGCATTCTCAACCCGCCAGGCAACCCCAAAGCCAGCTATGTCGAG AACGACAGGCTGAGCAGCGATCCGCGTGCCTGGTACTACGACGCGCAGCACCACGACGGCAGCTGGTGGCCGAACTGGCTGAAATGGGTTCAGGAACATT GCGGTGCCGAACGTGAAACCCGGAGGGAGCTGGGCAACGCCGACTACCCGCCGATGGAGGCCGCGCCGGGGACCTATGTGCATGTGCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCCGGTCAGGCCAGCCCGAGACTCTGAATTTTGAACAAGAAGACTGGATGAAAACCCGCGACCGTATCCTTGAATGCGCGCTGACGCTGTTCAATCAGCA GGGCGAGCCGAACGTCTCCACACTGGAAATTGCCAATGAAATGGGCATCAGCCCCGGCAATCTGTATTACCACTTTCATGGCAAGGAGCCTTTGATTCTG GGCCTGTTCGAGCGTTTTCAGACAGAACTGGCGCCGCTGCTCGATCCGCCCTCGGACGCCAGGCTTGAGCCTGAAGACTACTGGATGTTTCTGCACCTGA TTGTCGAGCGGCTGTCGCACTATCGCTTTTTGTTTCAGGACCTGTCCAACCTCGCCGGACGACTGCCTAAACTGGCCCGCGGTATTCGCAACCTGCTCAA CTCGATCAAAAAGACCCTGGCCTCATTGCTGGCCCGCCTCAAGGCCCGCGGGCAACTGGTCAGCGAAACCCAGGCATTGGGGCAACTGGTGGAGCAGATC
|
|
| Amino Acid Sequence |
>poly(3-hydroxyalkanoate) polymerase
MQEKPAKAAAIAPAPANFINAQSAIAGVRGRDLLSTLRNVAAQGWRHPIRSARHALALGSQLGRVVLLGETLYPHNPKDSRFADPTWSLNPLYRRGLQVY LSCQHQVRQWIDDCDLSTEDRARAHFLFTLINDALAPSNTLLNPQAIKELFNSGGASLLKGLSHMADDLLHNNGLPSQTTKDAFEVGRTVAATPGAVVFR NEMFELIQYRPMSEKQFSRPVLIVPPQINKYYIFDLSPANSFVQYALKNGLSTFIISWRNPDIRHREWGLSSYVEAAEQAMNICRAISGAREVNLVGACA GGLTIAALLGHLQVKRQTRRVASATYMVSLLDSQIDSPATLFIDEQALEAAKRRSYQRGVLEGSEMSRVFSWMRPNDLIWTYWINNYLLGKSPPPFDILY WNNDTTRLPAALHGDLLDFFKHNPLSHAGGLEVCGTPIDLQKVTVDSFSVAGINDHITPWDSVYRSTLLLGGDRRFVLANSGHVQSILNPPGNPKASYVE NDRLSSDPRAWYYDAQHHDGSWWPNWLKWVQEHCGAERETRRELGNADYPPMEAAPGTYVHVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|