Pseudomonas syringae pv. tomato DC3000, PSPTO_4999
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAACCCCGCCGCGCAGCACTCGTTTATCGTCACCGAAGAGTTGGCACCGACCACCAGCCTGGAGGACGTCAGCCTCAACTGGCGCACCGAGCCACCCG AGCCGCGCCTGAAAAGGGCGTTCATTGCCGAAGTCGCCAGACTGGTCGGGATGATGCACCGGGCTGGCGTCAACCATCGCGATTGTTACATCTGTCATTT TCTGTTGCACACCGACAAGCCGGTGACCGCTGACGATTTCAGGCTGTCGGTAATCGATCTGCACCGTGCCCAGACGCGTCGGGCGATCACGCCACGCTGG CGCAACAAGGACCTTGCGGCGCTGTACTTCTCGGCGCTGGACATCGGCCTGACCCGGCGCGACAAGCTGCGTTTTCTCAAGGACTATTTTCAGCTGCCGC TACGCGAGATTCTGCTCAAGGAAGCCGCGCTGCTGACCTGGCTGGATAAAAAAGCCGACAAGTTGTATCAGCGTAAAGTGCGCTACGGGGATGCGCTCTG
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| DNA Sequence for Gene |
>PSPTO_4999
ATGGCGGGTTGGAACCTTGAGCCGGAGTACACTTCTCTGGCGCGGGACTTCGGAAGCCTGGACGCCGTGTTCGCCTTGCAGGGCCAGCAGTTGACCCGTG ATCCGCTTTCCGATGTCATCCGTGTCGAGCGTGCCGGCGTCTACTATTTCGTCAAACGCTACGTGGGCGCGGGCAAAGGCCTGCGCCGTTACATGGGCAA GCCCAGAGTCAAGTCCGAGTGGCAGAACCTCAAGCGCTTCGCCAAATGGGGCATTCCAACGGCCGAAGTTGTGGCCTGGGGGCTGGAGCGCAATGGCGCA GCGTACGATCGCGGCGCACTGATCACGCGTGGCTTGCCGAACACCGAAGACTTGTCGGCGCTGGCGCAACGCAAGGACCCGCGACTGGCCGATCGCCAGT GGGTCGATGGCATCAGCCGTCAGTTGGCGGCTTATACCCGGATCATGCACGACAACCATTTCACACATAACGATTTGAAATGGCGCAATCTGCTGGTCGA TAACGAAGACAGACTGTTTTTCATCGATTGCCCCAACGGCGCATTCTGGTGGAGCTTCATGCTGCGCTACCGGATCACCAAAGATCTGGCGTGCCTGGAC AAGGTTGCCAAGTATCATCTGTCGGCCACCCAGCGCCTGCGCTTCTACTTGCAGTACCGTCAGCGAGCGCGTTTGAACGCCGCCGACAAAAAACGAATTC GACACATCGTCAGCTTTTTCGAGGGCCGTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTTTTTATTGCCAGTGCCGATCAGCCTTTGCTGATGCGTCACGACCTGGCTGATTTTGAATCGCTTTGGAATATCCGGCTCGATGCAGTCGATGAGCC CAACACCGGTCGAGGTGGCTGGAGCAGTGTGTTTCGCCTTGATCTGGACGGCCAGGGTTTCTACCTCAAGCGCCAGAGCAATTACCTGACGCACACGTTG CATCACCCGTTTGGCGAGCCTTCGTTTTCGCGTGAGTTTCGTAATATCAGCCGCTACCGCAAGCTGGGTATTCCGGCGCTGCAAGCGGTGTTTTACGGCG AGCGCAAGGTCGACGGTGAGCGCCGTGCAATCCTGATGACCCGCGCGCTGGATGGCTGGACCGATCTCGATGAGCTGTTGCAGCAATGGAGCGCGCTGGC CTCGGAGCAGCGTTCGGGGATACTTCAGGCCTGTGGTCTTCTTGCACGTACGCTGCATGGTGCGGGGCAGGTGCACGGCTGCTTCTACCCCAAGCATATT
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| Amino Acid Sequence |
>lipopolysaccharide core biosynthesis protein
MAGWNLEPEYTSLARDFGSLDAVFALQGQQLTRDPLSDVIRVERAGVYYFVKRYVGAGKGLRRYMGKPRVKSEWQNLKRFAKWGIPTAEVVAWGLERNGA AYDRGALITRGLPNTEDLSALAQRKDPRLADRQWVDGISRQLAAYTRIMHDNHFTHNDLKWRNLLVDNEDRLFFIDCPNGAFWWSFMLRYRITKDLACLD KVAKYHLSATQRLRFYLQYRQRARLNAADKKRIRHIVSFFEGRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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